GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002138-TA|BGIBMGA002138-PA|IPR000436|Sushi/SCR/CCP,
IPR006585|Fucolectin tachylectin-4 pentraxin-1, IPR001304|C-type
lectin, IPR003006|Immunoglobulin/major histocompatibility complex,
IPR008979|Galactose-binding like
         (1091 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    26   1.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   8.6  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 799 PSNATFYGATAFYQCDENWELEGVIRRMCQ-ENGTWSLEPPICKEITCPD 847
           PS   FY    FY+ +  W         C  ENG        C ++TCPD
Sbjct: 669 PSGDCFY-ENKFYRQEAQWTSSDNPCTTCFCENGNNKCFTMECPQVTCPD 717


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 494 SYTCENGHILSGSTSVTCTLG 514
           SY C   H L+G T ++ T G
Sbjct: 198 SYQCRTKHRLTGETRLSATKG 218


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.135    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 294,508
Number of Sequences: 317
Number of extensions: 14075
Number of successful extensions: 16
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 3
length of query: 1091
length of database: 114,650
effective HSP length: 64
effective length of query: 1027
effective length of database: 94,362
effective search space: 96909774
effective search space used: 96909774
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)