GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002138-TA|BGIBMGA002138-PA|IPR000436|Sushi/SCR/CCP,
IPR006585|Fucolectin tachylectin-4 pentraxin-1, IPR001304|C-type
lectin, IPR003006|Immunoglobulin/major histocompatibility complex,
IPR008979|Galactose-binding like
         (1091 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    26   1.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   2.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   2.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   5.9  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 614 CEAGHKLIGEPNLVCQQDGEWSGDSPTC 641
           C A   +I +P  +C+ DG+W   S  C
Sbjct: 220 CVANAVVIEQPTFLCKGDGKWYLPSGGC 247


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 846 PDPSAQIKAGSGLLVVTSTLSIGGEAHYQCERGYNLKGHQTR 887
           PD   Q     G LV+TS    G    Y C    N +GH  R
Sbjct: 560 PDDLRQKVLPDGTLVITSVQKKGDAGVYTCS-ARNKQGHSAR 600


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 846 PDPSAQIKAGSGLLVVTSTLSIGGEAHYQCERGYNLKGHQTR 887
           PD   Q     G LV+TS    G    Y C    N +GH  R
Sbjct: 560 PDDLRQKVLPDGTLVITSVQKKGDAGVYTCS-ARNKQGHSAR 600


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 647 GKLPTLPYGTMELLNGTTHLGSVIQYSCTTNYRLVGPVRRTCTE 690
           GK   LP G + + +     G    Y C T +RL G  R + T+
Sbjct: 155 GKYLVLPSGELHIRDVGPEDGYKT-YQCRTKHRLTGETRLSATK 197


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.135    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 355,978
Number of Sequences: 429
Number of extensions: 16628
Number of successful extensions: 40
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 9
length of query: 1091
length of database: 140,377
effective HSP length: 65
effective length of query: 1026
effective length of database: 112,492
effective search space: 115416792
effective search space used: 115416792
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)