GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002138-TA|BGIBMGA002138-PA|IPR000436|Sushi/SCR/CCP,
IPR006585|Fucolectin tachylectin-4 pentraxin-1, IPR001304|C-type
lectin, IPR003006|Immunoglobulin/major histocompatibility complex,
IPR008979|Galactose-binding like
         (1091 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12590.1 68416.m01568 expressed protein                             32   2.4  
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c...    31   4.2  
At5g43560.2 68418.m05326 meprin and TRAF homology domain-contain...    31   5.6  
At5g43560.1 68418.m05325 meprin and TRAF homology domain-contain...    31   5.6  
At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative simil...    31   5.6  
At2g05710.1 68415.m00611 aconitate hydratase, cytoplasmic, putat...    31   5.6  
At1g04380.1 68414.m00428 2-oxoglutarate-dependent dioxygenase, p...    31   5.6  

>At3g12590.1 68416.m01568 expressed protein
          Length = 1162

 Score = 31.9 bits (69), Expect = 2.4
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 294 WQWVDGELVSKPSWGKDQPNNYNGEQNCVVLD-GGRGWLWNDVGCNLDYLHW 344
           W+WV    +S  S   ++P N     NC +L+ G  G L  D+   +   HW
Sbjct: 267 WRWVGELQLSSASSESERPVNLQDMNNCNLLEVGAAGLLVGDMEAKMKGQHW 318


>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
           checkpoint protein, putative contains 5 WD-40 repeats
           (PF00400) (1 weak); similar to testis mitotic checkpoint
           protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
          Length = 340

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 454 GDEGIWDGEAPRCLFDWCPDPPAVSNASVTVNGHKAGSLASYTCENG 500
           G   IWDG   + L+ +   P ++S  S + +G      +SYT E G
Sbjct: 263 GFVNIWDGNNKKRLYQYSKYPTSISALSFSRDGQLLAVASSYTFEEG 309


>At5g43560.2 68418.m05326 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 1055

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 10/83 (12%)

Query: 723 DRSHGHTLIRTSDNRDVGNTYRIGALVKYRCEKGYKVIGESLSTCED--------NGQWS 774
           D S  H       +R  GN++ I   V  R  KG   + +S STC +        NG + 
Sbjct: 534 DASEVHPPSAGDTSRGRGNSFSIPNGVAER--KGLSTMDDSSSTCSNDSIQSGVANGSYK 591

Query: 775 GTTPTCQYVDCGNPGRIENGKVT 797
           G    CQ     + G+I+ GKV+
Sbjct: 592 GNVLNCQSQKWFSNGKIQPGKVS 614


>At5g43560.1 68418.m05325 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 1055

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 10/83 (12%)

Query: 723 DRSHGHTLIRTSDNRDVGNTYRIGALVKYRCEKGYKVIGESLSTCED--------NGQWS 774
           D S  H       +R  GN++ I   V  R  KG   + +S STC +        NG + 
Sbjct: 534 DASEVHPPSAGDTSRGRGNSFSIPNGVAER--KGLSTMDDSSSTCSNDSIQSGVANGSYK 591

Query: 775 GTTPTCQYVDCGNPGRIENGKVT 797
           G    CQ     + G+I+ GKV+
Sbjct: 592 GNVLNCQSQKWFSNGKIQPGKVS 614


>At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative similar
           to SP|Q9ULA0 Aspartyl aminopeptidase (EC 3.4.11.21)
           {Homo sapiens}; contains Pfam profile PF02127:
           Aminopeptidase I zinc metalloprotease (M18)
          Length = 526

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 156 FPGTIDEGVTKTFTCARPLIGQHVFLQLVGVEGSLSLCEVEVFTTEEFSNDRCAPAGAPA 215
           F G +D  +  +F   R LI      + +  E  + +  + +F  EE  +D C  AGAP 
Sbjct: 305 FSGRLDN-LASSFCALRALIDSCESSENLSTEHDIRM--IALFDNEEVGSDSCQGAGAPT 361

Query: 216 DIELAAFSRNCYEFNVARGGSFDEARKQCQSHGGDLIHGFQGATSSFLTQELERRKAQLK 275
             +      +          +FD A ++      D+ HG      +F  +  E  + QL 
Sbjct: 362 MFQAMRRIVSSLGNKQVTECTFDRAIRKSFLVSADMAHGVH---PNFADKHEENHRPQLH 418

Query: 276 TQLV 279
             LV
Sbjct: 419 KGLV 422


>At2g05710.1 68415.m00611 aconitate hydratase, cytoplasmic, putative
           / citrate hydro-lyase/aconitase, putative nearly
           identical to SP|P49608 Aconitate hydratase, cytoplasmic
           (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase)
           {Cucurbita maxima}; contains Pfam profiles PF00330:
           Aconitase family (aconitate hydratase), PF00694:
           Aconitase C-terminal domain
          Length = 990

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 855 GSGLLVVTSTLSIGGEAHYQCERGYNLKGHQTRTCI-SKGQWNGTVPVCI 903
           GSG  VVT  L   G   Y  E+G+N+ G+   TCI + G+ N +V   I
Sbjct: 570 GSG--VVTKYLLKSGLQEYLNEQGFNIVGYGCTTCIGNSGEINESVGAAI 617


>At1g04380.1 68414.m00428 2-oxoglutarate-dependent dioxygenase,
           putative Strong similarity to Arabidopsis 2A6
           (gb|X83096), tomato ethylene synthesis regulatory
           protein E8 (SP|P10967)
          Length = 345

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 335 VGCNLDYLHWICQYLPPTCGSPDKLLNTT 363
           +GC +  LH IC Y PP C  PD+ L T+
Sbjct: 190 MGC-MKGLHMICHYYPP-CPQPDQTLGTS 216


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.135    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,836,104
Number of Sequences: 28952
Number of extensions: 1398203
Number of successful extensions: 2569
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2566
Number of HSP's gapped (non-prelim): 9
length of query: 1091
length of database: 12,070,560
effective HSP length: 89
effective length of query: 1002
effective length of database: 9,493,832
effective search space: 9512819664
effective search space used: 9512819664
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 64 (29.9 bits)