GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002137-TA|BGIBMGA002137-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (314 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces...    30   0.49 
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    28   1.5  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.6  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    27   4.6  
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    26   8.0  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    26   8.0  

>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 257

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 110 TLEVCR-ALQF-LGQASTYSYSLFFAMAAI--ENYYRLCRSSDEYVMFISMHTSCTCVFI 165
           T+E C  ++QF L + +  SYSL  ++A+     Y  + R +  YV + +   +  C+ I
Sbjct: 183 TVEACLFSIQFVLDRNNGPSYSLLASLASQLPPPYGAMIRHTTSYVPYFTQLITDACMTI 242

Query: 166 FALSFC 171
           FAL  C
Sbjct: 243 FALGLC 248


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 4/94 (4%)

Query: 93  SSVMPISGVVLLSGEWDTLEVCRALQFLGQASTYSYSLFFAMAAIENYYRLCRS-SDEYV 151
           S V P S     S  W       +LQ +       Y L  AMA++ +Y +  +  +  Y+
Sbjct: 93  SLVYPSSSFSSTSKFWRYFAYLLSLQIV--IDFVLYKLSSAMASL-HYLKFVKIIALSYI 149

Query: 152 MFISMHTSCTCVFIFALSFCLSAVGVFLNLDYDY 185
            F S+   C C   F     LS++  F+NL +D+
Sbjct: 150 CFSSLIRICHCWTYFIRIMGLSSLNKFVNLLHDF 183


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/46 (23%), Positives = 23/46 (50%)

Query: 176 GVFLNLDYDYCLRTDYGNFAFRITTLIIFHAVPLVVTYVGFLICAI 221
           G+ +N   D  +  D+ N+A  +   ++ H + +++ YV  L   I
Sbjct: 3   GMHMNSTGDNPIEIDFENYANHMNKFLMAHIICMIIAYVFILPAGI 48


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/57 (22%), Positives = 24/57 (42%)

Query: 158 TSCTCVFIFALSFCLSAVGVFLNLDYDYCLRTDYGNFAFRITTLIIFHAVPLVVTYV 214
           T C CV +    +C+  + + L     +     Y     R+  +I+F  + +V  YV
Sbjct: 9   TICQCVLVILAKYCMQIIALSLMSGVQWLAWGIYKINKNRVGIIILFLYIMIVTCYV 65


>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 250 IAVYSLHVLAWIPYL--IVVYDYPNAPDYKFYHSTWIAVCRPVLTNFLY 296
           I+ +++ VL  +P    ++V  YP+     FYH  W     P L  + +
Sbjct: 89  ISFHTIVVLLLLPPFSHLLVLVYPSVFTTAFYHQKWALRLNPCLPTYFF 137


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 155 SMHTSCT--CVFIFALSFCLSAVGVFLNLDYDYCLRTDYGNFAFRITTLIIF 204
           S+ TS T  CVF+F L+     + +  NL   + +   YG   F  +TL IF
Sbjct: 149 SLSTSITHSCVFMFGLTLFSRLIQIPFNLYSTFVIEEKYG---FNKSTLKIF 197


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.330    0.141    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,449,371
Number of Sequences: 5004
Number of extensions: 60214
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 142
Number of HSP's gapped (non-prelim): 6
length of query: 314
length of database: 2,362,478
effective HSP length: 73
effective length of query: 241
effective length of database: 1,997,186
effective search space: 481321826
effective search space used: 481321826
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 54 (25.8 bits)