GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002137-TA|BGIBMGA002137-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (314 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0626 - 4694150-4694356,4694443-4694556,4694581-4694991,469...    31   0.91 
06_01_0551 + 3930456-3930708,3932103-3932677,3932819-3933198,393...    30   2.1  
02_05_1116 - 34229234-34229440,34229534-34229593,34229663-342300...    29   3.7  
01_06_1264 + 35854600-35856849                                         29   6.4  
09_02_0119 - 4481522-4481580,4481615-4481718,4483132-4483231,448...    28   8.5  
05_01_0415 - 3275236-3276244,3276342-3276428,3276829-3277208,327...    28   8.5  

>02_01_0626 -
           4694150-4694356,4694443-4694556,4694581-4694991,
           4695252-4695582,4695667-4695753,4695839-4696218,
           4696360-4696934,4699036-4699207,4699832-4699846
          Length = 763

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 4/92 (4%)

Query: 15  AAPVLGGLTAHNTSRVYSPVTLSSEWPTVGRLLFVVSCSCLG---TILNGFFVS-SFFVE 70
           A  ++G +T + TS  YSPV   ++    G    V+    LG    I+  F ++ S F+ 
Sbjct: 393 AGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAFSIFLS 452

Query: 71  FTLKKVGNVFLACVGLADLIMTSSVMPISGVV 102
           F+L  +  V +A +G+   I T   +   G +
Sbjct: 453 FSLAAMYGVAVAALGMLSTIATGLAIDAYGPI 484


>06_01_0551 +
           3930456-3930708,3932103-3932677,3932819-3933198,
           3933301-3933387,3933473-3933803,3933936-3934346,
           3934430-3934489,3934586-3934792
          Length = 767

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 4/92 (4%)

Query: 15  AAPVLGGLTAHNTSRVYSPVTLSSEWPTVGRLLFVVSCSCLG---TILNGFFVS-SFFVE 70
           A  ++G +T + TS  YSPV   ++    G    V+    LG    I+  F ++ S +V 
Sbjct: 415 AGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIYVS 474

Query: 71  FTLKKVGNVFLACVGLADLIMTSSVMPISGVV 102
           F++  +  + +A +G+   I T   +   G +
Sbjct: 475 FSIAAMYGIAVAALGMLSTIATGLAIDAYGPI 506


>02_05_1116 -
           34229234-34229440,34229534-34229593,34229663-34230073,
           34230357-34230687,34230781-34230867,34230952-34231331,
           34231531-34232105,34233035-34233272
          Length = 762

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 4/82 (4%)

Query: 15  AAPVLGGLTAHNTSRVYSPVTLSSEWPTVGRLLFVVSCSCLG---TILNGFFVS-SFFVE 70
           A  ++G +T + TS  YSPV   ++    G    V+    LG    I+  F ++   +V 
Sbjct: 410 AGLIIGYVTEYYTSNAYSPVQDVADACRTGAATNVIFGLALGYKSVIIPIFAIALGIYVS 469

Query: 71  FTLKKVGNVFLACVGLADLIMT 92
           FT+  +  + +A +G+   I T
Sbjct: 470 FTIAAMYGIAVAALGMLSTIAT 491


>01_06_1264 + 35854600-35856849
          Length = 749

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 10/61 (16%)

Query: 164 FIFALSF----CLSAVGVFLNLDYDYCLRTDYGNFAFRITTLIIFHAV----PLVVTYVG 215
           F FA+S     C  A+ VFL+  Y +   T YG  A+R T+ ++ +A+    PLVV  + 
Sbjct: 498 FAFAMSTMFYTCADALPVFLHERYIFLRETAYG--AYRRTSYVLSNAIVSFPPLVVLSLA 555

Query: 216 F 216
           F
Sbjct: 556 F 556


>09_02_0119 -
           4481522-4481580,4481615-4481718,4483132-4483231,
           4483307-4483404,4483688-4483828,4485736-4485788,
           4486578-4486649,4487730-4487801,4487895-4487987,
           4489040-4489107,4489268-4489358
          Length = 316

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)

Query: 34  VTLSSEWPTVGRLLFVVSCSCLGTILNGFFVSSFFVEFTLK 74
           +T   EWP  G ++  VSCS     +     SSF ++F LK
Sbjct: 222 MTSVQEWPGAGTMVAAVSCSVQKEPIVVGKPSSFLMDFLLK 262


>05_01_0415 -
           3275236-3276244,3276342-3276428,3276829-3277208,
           3279236-3279325
          Length = 521

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 5/98 (5%)

Query: 9   SAGVDAAAPVLGGLTAHNTSRVYSPVTLSSEWPTVG---RLLFVVSCSCLGTILNGFFVS 65
           SAG+ A   V+G +T + TS  Y PV   ++    G    ++F ++      I+  F ++
Sbjct: 164 SAGLWAGL-VIGYVTEYFTSNAYGPVQTVAQSCRTGAATNVIFGLAVGYKSVIVPIFAIA 222

Query: 66  -SFFVEFTLKKVGNVFLACVGLADLIMTSSVMPISGVV 102
            + +  F L  +  + LA +G+   I T   +   G +
Sbjct: 223 GAIYASFRLAAMYGIALAALGMLSTIATGLTIDAYGPI 260


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.330    0.141    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,961,161
Number of Sequences: 37544
Number of extensions: 357781
Number of successful extensions: 786
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 785
Number of HSP's gapped (non-prelim): 7
length of query: 314
length of database: 14,793,348
effective HSP length: 82
effective length of query: 232
effective length of database: 11,714,740
effective search space: 2717819680
effective search space used: 2717819680
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 60 (28.3 bits)