Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002136-TA|BGIBMGA002136-PA|IPR000884|Thrombospondin,
type I, IPR001791|Laminin G, IPR008085|Thrombospondin, subtype 1,
IPR008985|Concanavalin A-like lectin/glucanase
(1085 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S... 31 0.87
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 31 0.87
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos... 30 1.5
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 2.7
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 3.5
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 28 6.1
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 28 6.1
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 28 8.1
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|... 28 8.1
>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
L3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 326
Score = 31.1 bits (67), Expect = 0.87
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 1021 RLLIAKRMYSPRKTSISNRKSITENVSNPRKTRSKLFTIKSSSGLQQSAAQKIL 1074
R I+ + Y+ + ++ KS+ EN+ + + SK++T+K GL +S K+L
Sbjct: 12 RRSISMKDYARVRWYSNSGKSLIENILSSKIAISKVYTLKKRIGLPESYPMKVL 65
>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 452
Score = 31.1 bits (67), Expect = 0.87
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 9/115 (7%)
Query: 738 KNGIVQMSSRTASVSGSYHETSLGRSNRLNLTCLHARNVRNHNE--ADWFLLDTAIKDEM 795
KNG++ + TA SY + + NL+ H + +H++ D LL + + E
Sbjct: 306 KNGLLHYNMETAETDESYTDLDDTFARLKNLSQRHTNHSTDHHDDTVDSHLLHSFVSAEN 365
Query: 796 NGETVQFVDDSRL------LKLFASMDSDLRGFYTCRARSNKR-MQNIITYGVLG 843
E VDD+ L F S + T RS KR + I+ G G
Sbjct: 366 ANEPTNDVDDNSLQEQVADASQFVSFLETTKTVATSNLRSTKRKLSEILENGQSG 420
>SPBC215.03c |csn1||COP9/signalosome complex subunit
Csn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 101 SCYLTNCTVN--DYKELIKGDAIRNDAFRHLETVPSLMERCLQTEC 144
S Y++ C + D+K LI+ + RN+ F L + + RCLQ +C
Sbjct: 228 SVYISLCALACWDHKRLIQ-ELERNEEFNALSDLDPSLRRCLQAKC 272
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 237 AIDIRNSNGAWGEWSPWTACSESCGIGLXXXXXSCLEMRTPISTSTWGTHCKGQHDELEM 296
+I ++ NG+ EW + +C+ C + C + PIS + HC D L
Sbjct: 391 SISKKDENGSVKEWFGYYSCNNPCTLFFDCGLHKCSKTCHPISETR--AHCPFATDVLTK 448
Query: 297 C 297
C
Sbjct: 449 C 449
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.1 bits (62), Expect = 3.5
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 4/100 (4%)
Query: 990 SSPGHGSFSSPRTKFTSTSSLEMTSPRVLCSRLLIAKRMYSPRKTSISNRKSI----TEN 1045
SSP S S+ + STSS+ TS + ++ S +S S+ SI + +
Sbjct: 220 SSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSS 279
Query: 1046 VSNPRKTRSKLFTIKSSSGLQQSAAQKILQKFQELKKYDS 1085
S+P T S + + SSS S + I + S
Sbjct: 280 SSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSS 319
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
Query: 338 AGNGSPCMGQRTEIGSCHMLPCNA 361
A NG+P G R SC+ LPCNA
Sbjct: 211 AANGAPKFGDR----SCYQLPCNA 230
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 28.3 bits (60), Expect = 6.1
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 982 LRCEPNYISSPGHGSFSSPRT-KFTSTSSLEMTSPRVLCSRLLIAKRMYSPRKTSISNRK 1040
+R N I + S PR KFT+ SS+E+ +P +L K + R S N+
Sbjct: 210 IRSPSNLIEAISDMSLDEPRIYKFTAASSMEIETPDLL-------KLPHEDRTQSAYNQG 262
Query: 1041 S-ITENVSNPRKTRSKLFTIKSSSGLQQSAAQ 1071
S T+N P T S GLQ AQ
Sbjct: 263 SEETQNFDGP----PSAVTFSSIGGLQAQIAQ 290
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 27.9 bits (59), Expect = 8.1
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 1012 MTSPRVLCSRLLIAKRMYSPRKTSISNRKSITENVSNPRKTRSKLFTIKSSSGLQQSAAQ 1071
M + + SR+ + P+K S RK + +N+ + +K K+ SSSG ++ A
Sbjct: 863 MRNQTFILSRISSDTILLVPKKLYPSKRKKLRKNLDDLQKKLDKIQHTTSSSGYEK-APS 921
Query: 1072 KILQKFQELKK 1082
I K EL+K
Sbjct: 922 YIKLKNCELQK 932
>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 145
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 381 NMHSTLFHFYIRFLPISPHGTLVRRGTLHGPYVRLSLQTWHICLDASGLAPSCSL 435
++HS FH + +L++ LH P+ R + + +C+ +A SCS+
Sbjct: 37 SIHSIPFHISTHLTSCQANISLLKIVGLHCPFHRRGIASLSVCVALHWIAFSCSV 91
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.135 0.423
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,721,203
Number of Sequences: 5004
Number of extensions: 191080
Number of successful extensions: 389
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 384
Number of HSP's gapped (non-prelim): 12
length of query: 1085
length of database: 2,362,478
effective HSP length: 80
effective length of query: 1005
effective length of database: 1,962,158
effective search space: 1971968790
effective search space used: 1971968790
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)
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