GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002136-TA|BGIBMGA002136-PA|IPR000884|Thrombospondin,
type I, IPR001791|Laminin G, IPR008085|Thrombospondin, subtype 1,
IPR008985|Concanavalin A-like lectin/glucanase
         (1085 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   3.7  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    24   6.5  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 14/36 (38%), Positives = 17/36 (47%)

Query: 998  SSPRTKFTSTSSLEMTSPRVLCSRLLIAKRMYSPRK 1033
            +SP    TSTSS     P      +LI + M  PRK
Sbjct: 424  TSPSNTNTSTSSTNSNKPNSSDLNMLIKETMPLPRK 459


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/41 (24%), Positives = 23/41 (56%)

Query: 663 KCKKPKQSTEGHLTDKIKVDSLLISLCTDEFFVGGVPKNIN 703
           +C K  +  +G +T+K+  D ++ +  + E+    +P NI+
Sbjct: 51  QCDKYYECNDGQITEKLCPDGMVFNDYSSEYEKCDLPFNID 91


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.135    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,487
Number of Sequences: 317
Number of extensions: 10066
Number of successful extensions: 31
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 2
length of query: 1085
length of database: 114,650
effective HSP length: 64
effective length of query: 1021
effective length of database: 94,362
effective search space: 96343602
effective search space used: 96343602
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)