GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002136-TA|BGIBMGA002136-PA|IPR000884|Thrombospondin,
type I, IPR001791|Laminin G, IPR008085|Thrombospondin, subtype 1,
IPR008985|Concanavalin A-like lectin/glucanase
         (1085 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0501 - 8920458-8920646,8920918-8921024,8921136-8921352,892...    34   0.71 
06_01_0895 + 6877386-6878475,6878577-6878838,6878932-6879017,687...    31   5.0  
02_04_0521 - 23631951-23633810                                         31   6.6  
11_04_0071 - 13165019-13165082,13165345-13165428,13166325-131665...    30   8.8  
03_06_0621 - 35147070-35148359,35148499-35148579,35148665-351487...    30   8.8  
02_04_0350 + 22234632-22235145,22235277-22236209,22237253-222373...    30   8.8  

>03_02_0501 -
           8920458-8920646,8920918-8921024,8921136-8921352,
           8921744-8922157
          Length = 308

 Score = 33.9 bits (74), Expect = 0.71
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 741 IVQMSSRTASVSGSYHETSLGRSNRL--NLTCLHAR-NVRNHNEADWFLLDTAIKDEM 795
           I  +S   A  SGS +  + G  N+L  NL C  A+ N+R ++ A W++  + ++DE+
Sbjct: 191 ISSVSGVVAVSSGSVYAMTKGAMNQLAKNLACEWAKDNIRTNSVAPWYMKTSLVEDEL 248


>06_01_0895 +
           6877386-6878475,6878577-6878838,6878932-6879017,
           6879117-6879274,6879554-6879630,6879719-6879785
          Length = 579

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 8/73 (10%)

Query: 700 KNINVLVSEEFPTFTGIVASITVDNILL------DIHQLSIERNKNGIVQMSSRTASVSG 753
           +   +L++E+FP   G +ASI VD  ++      D+ +   E  ++G + ++ R ++ S 
Sbjct: 142 RGARILITEQFPDTAGAIASIVVDADVVSLDGRRDMIETEAEVKEDGKIHVTVRRSNASR 201

Query: 754 S--YHETSLGRSN 764
           S  Y   S+G S+
Sbjct: 202 SDVYSRRSMGFSS 214


>02_04_0521 - 23631951-23633810
          Length = 619

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 427 SGLAPSC---SLPRICSHSVIEPAVWHSVLVTVTNEAATLRLDDSPVTLKNTFP----CD 479
           SG  P+C   SLP + + ++   A+   +   ++  A+   LD S   L    P     D
Sbjct: 141 SGAVPTCFPASLPALRALNLSANALRFPLSPRLSFPASLAALDLSRNALTGAVPPRVVAD 200

Query: 480 PDLPNDEVEEIIVGERFHGEVQELILNFMPLQLMSERYRRKSGFYPTGVTNLAYEKA 536
           PD     + ++    RF GE+   I     LQ +     + SG  PTG+ NL Y +A
Sbjct: 201 PDASGLLLLDLS-HNRFSGEIPVGITAIRSLQGLFLADNQLSGEIPTGIGNLTYLQA 256


>11_04_0071 -
           13165019-13165082,13165345-13165428,13166325-13166524,
           13166756-13170655
          Length = 1415

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 649 QDIESSFVCRDANNKCKKPKQSTEGHLTDKIKVDSLLISLCTDEFFVGGV 698
           +++  S    +  N C K +    G L DKI +  LL+S C++ F V  V
Sbjct: 738 RELGGSLAIYNLENICSKEESKNAG-LRDKIYLKDLLLSWCSNRFEVSSV 786


>03_06_0621 -
           35147070-35148359,35148499-35148579,35148665-35148741,
           35148792-35149298,35149405-35150278
          Length = 942

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 11/52 (21%), Positives = 26/52 (50%)

Query: 92  CSGEAEQIRSCYLTNCTVNDYKELIKGDAIRNDAFRHLETVPSLMERCLQTE 143
           C GE + +  C+L +       +++    +   + R ++ + S+ E CL+T+
Sbjct: 806 CLGEQKNLCHCFLQSLRDKTTMDILDSQVVEEASHREIDEMASVAEMCLKTK 857


>02_04_0350 +
           22234632-22235145,22235277-22236209,22237253-22237340,
           22237859-22237865
          Length = 513

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 12/83 (14%)

Query: 187 AWGTWSSCGARCGHGFRWRLR----RCDAPP-PSEALLICSGYPLQTDECVGDQCAIDIR 241
           AWG      A CGHGF W +R    R DA   P E L   +G  L    C  +Q A+   
Sbjct: 319 AWGL-----ANCGHGFLWIVRPDLVRGDAAVLPREFLEAVAGRGLLASWC--EQEAVLRH 371

Query: 242 NSNGAWGEWSPWTACSESCGIGL 264
            + GA+     W +  ES   G+
Sbjct: 372 GAVGAFLTHCGWNSTMESLSAGV 394


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.135    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,583,103
Number of Sequences: 37544
Number of extensions: 1242627
Number of successful extensions: 2378
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2376
Number of HSP's gapped (non-prelim): 7
length of query: 1085
length of database: 14,793,348
effective HSP length: 90
effective length of query: 995
effective length of database: 11,414,388
effective search space: 11357316060
effective search space used: 11357316060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)