GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002136-TA|BGIBMGA002136-PA|IPR000884|Thrombospondin,
type I, IPR001791|Laminin G, IPR008085|Thrombospondin, subtype 1,
IPR008985|Concanavalin A-like lectin/glucanase
         (1085 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g57650.1 68414.m06542 disease resistance protein (NBS-LRR cla...    32   2.4  
At4g03415.1 68417.m00468 protein phosphatase 2C family protein /...    31   5.5  
At3g50750.1 68416.m05554 brassinosteroid signalling positive reg...    31   5.5  
At2g47230.1 68415.m05898 agenet domain-containing protein contai...    30   7.3  
At5g40320.1 68418.m04892 DC1 domain-containing protein contains ...    30   9.6  

>At1g57650.1 68414.m06542 disease resistance protein (NBS-LRR class),
            putative domain signature NBS-LRR exists, suggestive of a
            disease resistance protein.
          Length = 709

 Score = 31.9 bits (69), Expect = 2.4
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 986  PNYISSPGHGSFSSPRTKFTSTSSLEMTSPRVLCS-RLLIAKRMYSPRKTSISNRKSITE 1044
            PN ISSPG  +F SP+ +    S   MTS R + +   L+  RM   +   + +   +  
Sbjct: 301  PNIISSPGPLTFISPKLRLLDWSCFPMTSLRFINNLEFLVELRMCYSKLEKLWDGIQLVR 360

Query: 1045 NVSNPRKTRSK 1055
            N+ +   T S+
Sbjct: 361  NLKHMDLTDSR 371


>At4g03415.1 68417.m00468 protein phosphatase 2C family protein / PP2C
            family protein similar to protein phosphatase-2C; PP2C
            (GI:3643088) [Mesembryanthemum crystallinum]; contains
            Pfam PF00481 : Protein phosphatase 2C domain;
          Length = 453

 Score = 30.7 bits (66), Expect = 5.5
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 1025 AKRMYSPRKTSISNRKSITENVSNPRKTRSK-LFTIKSSSGLQQSA 1069
            AKR +S    S+ N  SI   +++  K+RS  +FT +   G+ Q A
Sbjct: 38   AKRTFSDHIVSLQNLTSIPNRITSSSKSRSSCIFTQQGRKGINQDA 83


>At3g50750.1 68416.m05554 brassinosteroid signalling positive
            regulator-related contains similarity to BZR1 protein
            [Arabidopsis thaliana] gi|20270971|gb|AAM18490
          Length = 276

 Score = 30.7 bits (66), Expect = 5.5
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 986  PNYISSPGHGSFSSPRTKFTSTSSLEMTSPRVLCSRLLIAKRMYSPRKTSISNRKSITEN 1045
            P+Y +SP   S+ SP T+F    S     P +   + L +    +P +  ISN   +T  
Sbjct: 108  PSYQASPSSSSYPSP-TRFDPNQSSTYLIPYL---QNLASSGNLAPLR--ISNSAPVTPP 161

Query: 1046 VSNPRKTRSKLFTIKSSS 1063
            +S+PR++  +L   +SS+
Sbjct: 162  ISSPRRSNPRLPRWQSSN 179


>At2g47230.1 68415.m05898 agenet domain-containing protein contains
            Pfam PF05641: Agenet domain
          Length = 701

 Score = 30.3 bits (65), Expect = 7.3
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 1034 TSISNRKSITENVSNPRKTRSKLFTIKSSSGLQQSAAQKILQKFQELKK 1082
            T +   K+ T+  S+P+KT   L  ++  +GL+ S  QK+L++    KK
Sbjct: 386  TPLKQTKADTQGKSSPKKT---LEPMRDENGLENSTRQKVLEEKNSEKK 431


>At5g40320.1 68418.m04892 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 594

 Score = 29.9 bits (64), Expect = 9.6
 Identities = 16/41 (39%), Positives = 20/41 (48%)

Query: 799 TVQFVDDSRLLKLFASMDSDLRGFYTCRARSNKRMQNIITY 839
           TV++  D   LKL    D D+ G Y C     +  QNII Y
Sbjct: 466 TVRYKYDRHPLKLCYDGDKDMAGSYWCEICEKEMDQNIIFY 506


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.135    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,895,169
Number of Sequences: 28952
Number of extensions: 1013700
Number of successful extensions: 2108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2105
Number of HSP's gapped (non-prelim): 6
length of query: 1085
length of database: 12,070,560
effective HSP length: 89
effective length of query: 996
effective length of database: 9,493,832
effective search space: 9455856672
effective search space used: 9455856672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)