GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002135-TA|BGIBMGA002135-PA|IPR011685|LETM1-like
         (276 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   4.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   4.4  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   5.8  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 133 IASLGSGVHPSPKDVLACKDLFTKEPYQLSS 163
           + S G  V PSP   +A   +    PY L S
Sbjct: 693 LTSPGGMVLPSPSTSVASPSVSVASPYMLQS 723


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 133 IASLGSGVHPSPKDVLACKDLFTKEPYQLSS 163
           + S G  V PSP   +A   +    PY L S
Sbjct: 585 LTSPGGMVLPSPSTSVASPSVSVASPYMLQS 615


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/22 (31%), Positives = 10/22 (45%)

Query: 223 RGLNGSNLPNQDMRNWLQNWLS 244
           R    +  P Q+M  W   WL+
Sbjct: 5   RNTGNAGAPPQEMPTWFVRWLN 26


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.326    0.140    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,080
Number of Sequences: 317
Number of extensions: 2474
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 3
length of query: 276
length of database: 114,650
effective HSP length: 56
effective length of query: 220
effective length of database: 96,898
effective search space: 21317560
effective search space used: 21317560
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 43 (21.4 bits)