GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002135-TA|BGIBMGA002135-PA|IPR011685|LETM1-like
         (276 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.17 |||mitochondrial inner membrane protein involved in...    48   1e-06
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c...    34   0.019
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    29   0.96 
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    26   5.1  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    26   6.8  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    26   6.8  

>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
           potassium ion transport|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 57/243 (23%), Positives = 105/243 (43%), Gaps = 16/243 (6%)

Query: 34  KMSRQEIELYTKMPSDMLRIAPVLILSAIPFGNYIIFPLAFLKPRTLLCSHFWSIQQKVE 93
           +++R+E    T+   D+ R+ P  +   +PF   ++ P+A      LL S F   + K E
Sbjct: 155 ELTRRESRQLTRTLKDIGRLVPFSVFVVVPFAE-LLLPIAVKLFPNLLPSTFEDAKDK-E 212

Query: 94  FSRQELTERLRHNKPVFRSLQAQVEIIPDGDIK--LKWKRVIASLG-SGVHPSPKDVL-A 149
             + +L +       + RS     +     + +   +++     +  SG  PS ++++  
Sbjct: 213 AKKAQLRKTRNEVSNMLRSTLKSGKFTFSNETRESKEFRDFFQKVRTSGQSPSREELIEV 272

Query: 150 CKDLFTKEPYQLSSLNYAHLGHLLKMHGLRKSIFRTSKL-----KYRAFLLLEMDKAIIR 204
           CK  + K+   L +L+ A L  + +   L  + F T  L     ++R   +   D+AI  
Sbjct: 273 CK--YFKDDITLDNLSRAQLVAMCRYMNL--NAFGTDPLLRYNIRHRMRQIRRDDRAIYI 328

Query: 205 EGGVNILNAETLRNACHMRGLNGSNLPNQDMRNWLQNWLSVSENIDRTSYSLLLHCPIFF 264
           EG +N L+   L NAC+ RG+    L    ++  L  WL +       S  L+L     +
Sbjct: 329 EG-INSLSIPELFNACNSRGIRTQGLSPAKLKEELSVWLDMRIKHGIPSVILMLSNAFSY 387

Query: 265 AYN 267
            YN
Sbjct: 388 GYN 390


>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 34.3 bits (75), Expect = 0.019
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 6/93 (6%)

Query: 82  CSHFWSIQQKVEFSRQELTERLRHNKPVFRSLQAQVEIIPDGDIKLKWKRVIASLGSGVH 141
           C   WS+ QK   +  E T     +     S   +   + D D ++     ++S+ +G +
Sbjct: 145 CIESWSLNQKQNENFYEHTHLNSRDDSNPSSCDRETFFLSDEDSEISLMEGLSSIENG-Y 203

Query: 142 PSPKDVLACKDLFTKEPYQLSSLNYAHLGHLLK 174
           P  K+ LA  D       +LS  N AHLG+L+K
Sbjct: 204 PDEKETLAALD-----NVKLSDENAAHLGYLVK 231


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 187 KLKYRAFLLLEMDKAIIREGGVNILNAETLRNACHMRGLNGSNLPNQDMRNWLQNWLSVS 246
           K K +A  ++  ++A+  E     LN   +RN    +   GSN P    + + Q   S S
Sbjct: 380 KRKRKAKSMVSGNQALPGEANFQSLNQNNVRNYPFYQTNQGSNPP---AKRFTQEPPSSS 436

Query: 247 -ENIDRTSYSLLLHCPIFFAYNHPQ 270
             ++  +S +     P+++ YN+PQ
Sbjct: 437 LYSLSESSINYSTQSPMYYNYNYPQ 461


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)

Query: 11  DFLRDLKMYITLRIKVARDHGFSKMSRQEIELYTKMPSDMLR 52
           D L+DL  Y     K ++D G    SR  I LY ++  DML+
Sbjct: 436 DLLQDLTEY-----KSSKDKGVMMASRSLITLYREVAPDMLK 472


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 128 KW-KRVIASLGSGVHPSPKDVLACKDL 153
           KW +R I   G+  H S +D LAC DL
Sbjct: 391 KWLRREIQKAGALGHDSAEDALACVDL 417


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 143 SPKDVLACKDLFTKEPYQLSSLNYAH-LGHLLKMHG 177
           S + + A K+LFT  PYQ SS  +       L++HG
Sbjct: 479 SDEQIEASKELFTSAPYQESSAIWRRGAKQSLQLHG 514


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.140    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,264,084
Number of Sequences: 5004
Number of extensions: 52425
Number of successful extensions: 190
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 187
Number of HSP's gapped (non-prelim): 6
length of query: 276
length of database: 2,362,478
effective HSP length: 72
effective length of query: 204
effective length of database: 2,002,190
effective search space: 408446760
effective search space used: 408446760
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 53 (25.4 bits)