Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002135-TA|BGIBMGA002135-PA|IPR011685|LETM1-like
(276 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0378 - 24822436-24822521,24822623-24822738,24823010-248230... 73 3e-13
02_04_0562 - 23886272-23886357,23886456-23886571,23887045-238871... 63 2e-10
01_06_0535 + 30061862-30063388 30 2.3
11_01_0734 - 6078023-6078203,6078645-6078866,6079323-6079390,607... 29 4.1
01_05_0148 + 18609853-18610058,18610347-18612669 28 9.4
>04_04_0378 -
24822436-24822521,24822623-24822738,24823010-24823092,
24823772-24823918,24824004-24824051,24824153-24824353,
24824981-24825152,24825235-24825299,24825813-24825939,
24826436-24826528,24826608-24826696,24826804-24826950,
24827047-24827359,24827474-24828048
Length = 753
Score = 72.9 bits (171), Expect = 3e-13
Identities = 68/264 (25%), Positives = 128/264 (48%), Gaps = 22/264 (8%)
Query: 7 VGIKDFLRDLKMYITLRIKVARDHGFSKMSRQEIELYTKMPSDMLRIAPVLILSAIPFGN 66
+G K D+++ L +K+A G ++R+E + T+ +D+ R+ P + +PF
Sbjct: 215 LGTKLLWADVRISSRLLVKLA---GGKSLTRRERQQLTRTTADLFRLVPFAVFIIVPFME 271
Query: 67 YIIFPLAFLKPRTLLCSHFWSIQQKVEFSRQELTERL---RHNKPVFRSLQAQVEIIPDG 123
+++ P+ +L S F ++ E +++L R+ R + + + +V+ G
Sbjct: 272 FLL-PVFLKMFPNMLPSTFQDKMKEEEALKRKLKARMEYARFLQDTAKEMAKEVQTSRSG 330
Query: 124 DIKLKWK---RVIASLGSGVHPSPKDVLACKDLFTKEPYQLSSLNYAHLGHLLKMHGLRK 180
++K + + + G H S +++L+ LF E L ++N A L ++ K G++
Sbjct: 331 EMKQTAEDLDEFLNKVRKGGHVSNEEILSFAKLFNDE-LTLDNMNRARLVNMCKYMGIQP 389
Query: 181 SIFRTSKLKYRAFLL------LEMDKAIIREGGVNILNAETLRNACHMRGLNGSNLPNQD 234
F T Y F+L ++ D +I+ GV L+ E LR AC RG G L ++
Sbjct: 390 --FGTD--HYLTFMLRKKLQEIKNDDKMIQAEGVESLSEEELRQACRERGHLGL-LSTEE 444
Query: 235 MRNWLQNWLSVSENIDRTSYSLLL 258
M+N L++WL +S N S L+L
Sbjct: 445 MQNQLRDWLDLSLNHSVPSSLLIL 468
>02_04_0562 -
23886272-23886357,23886456-23886571,23887045-23887127,
23887683-23887829,23887946-23887993,23888166-23888384,
23889370-23889541,23889636-23889700,23890386-23890512,
23891358-23891450,23891520-23891629,23891722-23891868,
23892161-23892473,23892580-23893178
Length = 774
Score = 63.3 bits (147), Expect = 2e-10
Identities = 72/270 (26%), Positives = 124/270 (45%), Gaps = 27/270 (10%)
Query: 7 VGIKDFLRDLKMYITLRIKVARDHGFSKMSRQEIELYTKMPSDMLRIAPVLILSAIPFGN 66
+G K D+++ L +K+A G +SR+E + T+ +D+ R+ P + +PF
Sbjct: 223 LGTKLLWADVRISSRLLVKLA---GGKNLSRRERQQLTRTTADIFRLVPFAVFIIVPFME 279
Query: 67 YIIFPLAFLKPRTLLCSHFWSIQQKVEFSRQELTERLRHNK---PVFRSLQAQVEIIPDG 123
+++ L P +L S F ++ E +++L R+ + K + + +V+ G
Sbjct: 280 FLLPVFLKLFP-NMLPSTFQDKMKEEEALKRKLKARMEYAKFLQDTAKEMAKEVQTSRSG 338
Query: 124 DIKLKWK---RVIASLGSGVHPSPKDVLACKDLFTKE-----PYQLSSLNY-AHLGHLLK 174
+IK + + + G H S ++L LF E +L L Y L ++ K
Sbjct: 339 EIKQTAEDLDEFLNKVRRGEHVSNDEILNFAKLFNDELTLDNMSRLPFLIYLPRLVNMCK 398
Query: 175 MHGLRKSIFRTSKLKYRAFLL------LEMDKAIIREGGVNILNAETLRNACHMRGLNGS 228
G+R F T Y F+L ++ D +I+ GV L+ E LR AC RG G
Sbjct: 399 YMGIRP--FGTD--HYLRFMLRKKLQDIKNDDKMIQAEGVESLSEEELRQACRERGHLGL 454
Query: 229 NLPNQDMRNWLQNWLSVSENIDRTSYSLLL 258
L ++MR L++WL +S N S L+L
Sbjct: 455 -LSTEEMRQQLRDWLDLSLNHAVPSSLLIL 483
>01_06_0535 + 30061862-30063388
Length = 508
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 100 TERLRHNKPVFRSLQ-AQVEIIPDGDIKLKWKRVIASLGSGVHPSP 144
T ++H P L A +E++ + D + W+R++ SL SG H +P
Sbjct: 250 TGAIKHRNPASSKLSLAIIELVDEMDDET-WRRILQSLRSGDHVAP 294
>11_01_0734 -
6078023-6078203,6078645-6078866,6079323-6079390,
6079919-6079981,6095129-6095782
Length = 395
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 129 WKRVIASLGSGVHPSPKDVLACKDLFTKEPYQLSSLNYAHLGHLLKMHGL 178
W R ++SL S +H + ++V A T ++ + + H L+ +HGL
Sbjct: 260 WARCLSSLSSSIHVNARNVEAMYTAITMVVQEMHARHVKHYNFLM-LHGL 308
>01_05_0148 + 18609853-18610058,18610347-18612669
Length = 842
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/68 (20%), Positives = 30/68 (44%)
Query: 23 RIKVARDHGFSKMSRQEIELYTKMPSDMLRIAPVLILSAIPFGNYIIFPLAFLKPRTLLC 82
++KV R + R +I+ + + LR+ + + +P G + PL +L +
Sbjct: 751 KLKVLRLRDLPNLKRMDIQQGAMVSLERLRLINLSSMEEVPLGIEFLMPLKYLSFEEITV 810
Query: 83 SHFWSIQQ 90
S++Q
Sbjct: 811 DFLLSLRQ 818
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.326 0.140 0.430
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,827,999
Number of Sequences: 37544
Number of extensions: 316679
Number of successful extensions: 835
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 829
Number of HSP's gapped (non-prelim): 5
length of query: 276
length of database: 14,793,348
effective HSP length: 81
effective length of query: 195
effective length of database: 11,752,284
effective search space: 2291695380
effective search space used: 2291695380
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)
- SilkBase 1999-2023 -