GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002135-TA|BGIBMGA002135-PA|IPR011685|LETM1-like
         (276 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58363| Best HMM Match : LETM1 (HMM E-Value=0)                       37   0.021
SB_25430| Best HMM Match : MFS_1 (HMM E-Value=1.3e-33)                 32   0.45 
SB_42254| Best HMM Match : PH (HMM E-Value=5.5e-19)                    28   7.3  

>SB_58363| Best HMM Match : LETM1 (HMM E-Value=0)
          Length = 540

 Score = 36.7 bits (81), Expect = 0.021
 Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 14/146 (9%)

Query: 20  ITLRIKVARDHGFSKMSRQEIELYTKMPSDMLRIAPVLILSAIPFGNYIIFPLAFLKPRT 79
           I+LR+     +G S ++R+E   + +  +DM R+ P L+   IPF  +++ P+A      
Sbjct: 148 ISLRLLWQVMNGKS-LTRRERRQFLRTVADMFRLVPFLVFLVIPFMEFLL-PVAVKLFPN 205

Query: 80  LLCSHFWSIQQKVEFSRQELTERLRHNKPVFRSLQAQVEIIPDGDIKLKWKRVIASLGS- 138
           +L S F    +K E  R+EL  ++     + + LQ  VE +     + K +  + S  + 
Sbjct: 206 MLPSTFEDKSKKEEARRKELKGKIE----LAKFLQDTVEEMAVTAKQKKNQGAVVSFANF 261

Query: 139 -------GVHPSPKDVLACKDLFTKE 157
                  G  PS +D+L    LF  E
Sbjct: 262 FDKIRTRGEQPSNEDILKFSKLFEDE 287


>SB_25430| Best HMM Match : MFS_1 (HMM E-Value=1.3e-33)
          Length = 607

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 20/62 (32%), Positives = 30/62 (48%)

Query: 178 LRKSIFRTSKLKYRAFLLLEMDKAIIREGGVNILNAETLRNACHMRGLNGSNLPNQDMRN 237
           L K +F+T  L+Y  F L  +   I+  G      A+T RN C  R L+ S   ++  R 
Sbjct: 183 LLKHLFQTLSLRYVFFALSVIQIIIVAGGSAFRPFAQTQRNKCLPRLLDSSPFRDKSYRI 242

Query: 238 WL 239
           W+
Sbjct: 243 WV 244


>SB_42254| Best HMM Match : PH (HMM E-Value=5.5e-19)
          Length = 996

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 222 MRGLNGSNLPNQDMRNWLQNWLSVSENI 249
           MRG +   L +++ RNW + W  + +NI
Sbjct: 398 MRGCSKEWLADEERRNWKRRWFVLKDNI 425


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.326    0.140    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,923,090
Number of Sequences: 59808
Number of extensions: 339462
Number of successful extensions: 898
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 894
Number of HSP's gapped (non-prelim): 4
length of query: 276
length of database: 16,821,457
effective HSP length: 81
effective length of query: 195
effective length of database: 11,977,009
effective search space: 2335516755
effective search space used: 2335516755
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)