Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002135-TA|BGIBMGA002135-PA|IPR011685|LETM1-like
(276 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81073-5|CAD56580.1| 288|Caenorhabditis elegans Hypothetical pr... 52 4e-07
Z81073-4|CAC42296.1| 288|Caenorhabditis elegans Hypothetical pr... 51 8e-07
Z81094-2|CAB03156.1| 770|Caenorhabditis elegans Hypothetical pr... 49 4e-06
Z81094-1|CAB03150.1| 784|Caenorhabditis elegans Hypothetical pr... 49 4e-06
AC090999-25|AAK26157.2| 921|Caenorhabditis elegans Hypothetical... 32 0.51
AF077530-1|AAC26266.1| 441|Caenorhabditis elegans Hypothetical ... 29 2.7
U12965-8|AAA20606.1| 345|Caenorhabditis elegans Hypothetical pr... 29 3.6
AF016658-5|AAB66044.1| 186|Caenorhabditis elegans Hypothetical ... 29 4.8
Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical pr... 28 6.3
>Z81073-5|CAD56580.1| 288|Caenorhabditis elegans Hypothetical
protein F30F8.9b protein.
Length = 288
Score = 52.0 bits (119), Expect = 4e-07
Identities = 31/105 (29%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 1 MYRVFSVGIKDFLRDLKMYITLRIKVARDHG-FSKMSRQEIELYTKMPSDMLRIAPVLIL 59
++R G + D+KMY + VA + +S +E+E + S+++++ ++++
Sbjct: 60 LHRTVLEGSRWCFADVKMYFKTKRAVATGQKKLTDLSVEELETLVQSGSELIKMLTLIVI 119
Query: 60 SAIPF-GNYIIFPLAFLKPRTLLCSHFWSIQQKVEFSRQELTERL 103
IP G+ +I L F PR +L HFWS QQ+ E+ + E+T+ L
Sbjct: 120 LQIPGPGDILILMLIFF-PRLVLTRHFWSDQQRREYFQLEVTKAL 163
>Z81073-4|CAC42296.1| 288|Caenorhabditis elegans Hypothetical
protein F30F8.9a protein.
Length = 288
Score = 51.2 bits (117), Expect = 8e-07
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 1 MYRVFSVGIKDFLRDLKMYITLRIKVARDHG-FSKMSRQEIELYTKMPSDMLRIAPVLIL 59
++R G + D+KMY + VA + +S +E+E +MP + ++A V
Sbjct: 60 LHRTVLEGSRWCFADVKMYFKTKRAVATGQKKLTDLSVEELETLVQMPVEGPKMAIVTAF 119
Query: 60 SAIPFGNYII-FPLAFLKPRTLLCSHFWSIQQKVEFSRQELTERL 103
+P Y+ F + F PR +L HFWS QQ+ E+ + E+T+ L
Sbjct: 120 LPVPLSVYVFAFAIIFF-PRLVLTRHFWSDQQRREYFQLEVTKAL 163
>Z81094-2|CAB03156.1| 770|Caenorhabditis elegans Hypothetical
protein F58G11.1b protein.
Length = 770
Score = 48.8 bits (111), Expect = 4e-06
Identities = 54/231 (23%), Positives = 101/231 (43%), Gaps = 9/231 (3%)
Query: 35 MSRQEIELYTKMPSDMLRIAPVLILSAIPFGNYIIFPLAFLKPRTLLCSHFWSIQQKVEF 94
+SR+E + + SD+ R+ P +PF + P+ +L S F ++ E
Sbjct: 129 LSRRERQQLVRTVSDLFRLVPFSFFIIVPFME-LALPIFIKLFPGMLPSTFQESSKEEEK 187
Query: 95 SRQELTERLRHNKPVFRSLQA----QVEIIPDGDIKLKWKRVIASL-GSGVHPSPKDVLA 149
R+++ R+ K + +++ + + L++ I + G + S +++L
Sbjct: 188 WRKQVKLRVEMAKFLQDTIEEIGLERKTRNKESTRSLEFALFIKKVRNEGGYVSNEELLK 247
Query: 150 CKDLFTKEPY--QLSSLNYAHLGHLLKMHGLRKSIFRTSKLKYRAFLLLEMDKAIIREGG 207
LF E LS L L+ ++ L +L + L DK I EGG
Sbjct: 248 FSKLFEDEITLDNLSMGQLRSLCRLMSINSLGSPEILRFQLNMKIRELKADDKQIAAEGG 307
Query: 208 VNILNAETLRNACHMRGLNGSNLPNQDMRNWLQNWLSVSENIDRTSYSLLL 258
V+ L++ L++AC RG+ + + ++ L WL +S N D+ +LLL
Sbjct: 308 VDALSSIDLQSACRARGMRAIGVSEERLKEQLVQWLELSLN-DKVPPALLL 357
>Z81094-1|CAB03150.1| 784|Caenorhabditis elegans Hypothetical
protein F58G11.1a protein.
Length = 784
Score = 48.8 bits (111), Expect = 4e-06
Identities = 54/231 (23%), Positives = 101/231 (43%), Gaps = 9/231 (3%)
Query: 35 MSRQEIELYTKMPSDMLRIAPVLILSAIPFGNYIIFPLAFLKPRTLLCSHFWSIQQKVEF 94
+SR+E + + SD+ R+ P +PF + P+ +L S F ++ E
Sbjct: 129 LSRRERQQLVRTVSDLFRLVPFSFFIIVPFME-LALPIFIKLFPGMLPSTFQESSKEEEK 187
Query: 95 SRQELTERLRHNKPVFRSLQA----QVEIIPDGDIKLKWKRVIASL-GSGVHPSPKDVLA 149
R+++ R+ K + +++ + + L++ I + G + S +++L
Sbjct: 188 WRKQVKLRVEMAKFLQDTIEEIGLERKTRNKESTRSLEFALFIKKVRNEGGYVSNEELLK 247
Query: 150 CKDLFTKEPY--QLSSLNYAHLGHLLKMHGLRKSIFRTSKLKYRAFLLLEMDKAIIREGG 207
LF E LS L L+ ++ L +L + L DK I EGG
Sbjct: 248 FSKLFEDEITLDNLSMGQLRSLCRLMSINSLGSPEILRFQLNMKIRELKADDKQIAAEGG 307
Query: 208 VNILNAETLRNACHMRGLNGSNLPNQDMRNWLQNWLSVSENIDRTSYSLLL 258
V+ L++ L++AC RG+ + + ++ L WL +S N D+ +LLL
Sbjct: 308 VDALSSIDLQSACRARGMRAIGVSEERLKEQLVQWLELSLN-DKVPPALLL 357
>AC090999-25|AAK26157.2| 921|Caenorhabditis elegans Hypothetical
protein Y82E9BR.18 protein.
Length = 921
Score = 31.9 bits (69), Expect = 0.51
Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 86 WSIQQKVEFSRQELTERLRHNKPVFRSLQAQVEIIPDGDIKLKWKRVIASLGSGVHPSPK 145
W++++K FS E + K ++ + IPDG + ++ R++A + +P K
Sbjct: 146 WAVREKFTFSDDENSAAKTGEKLEISDVKLAISGIPDGK-EEQFGRILAQITKCGNPVTK 204
Query: 146 DVLA-CKDLFTKEPYQLSSLNYAHLGHLLKMHGLRKS 181
++LA C+ + + S ++ G+L K ++K+
Sbjct: 205 EILARCQVKWDTKIKNSSEISEIFDGNLHKFEEIQKA 241
>AF077530-1|AAC26266.1| 441|Caenorhabditis elegans Hypothetical
protein C40D2.3 protein.
Length = 441
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 198 MDKAIIREGGVNILNAETLRNACHMRGLNGSNLPNQDMRNWLQNWLSVS 246
+D +II E V ILN + + ++ +G +P DM ++ W+ ++
Sbjct: 390 VDNSIIIEAHVKILNMTGIESETTIKKTSGFTIPVGDMEYSMEKWMEMA 438
>U12965-8|AAA20606.1| 345|Caenorhabditis elegans Hypothetical
protein F23F12.4 protein.
Length = 345
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 208 VNILNAETLRNACHMRGLNGSNLPNQDMRNWLQNWLSVS 246
V + + ++LRN C LN S L NQ++ +L+ W+ +S
Sbjct: 237 VTVHHLKSLRN-CASVTLNNSKLTNQNLNWFLREWMEMS 274
>AF016658-5|AAB66044.1| 186|Caenorhabditis elegans Hypothetical
protein B0047.4 protein.
Length = 186
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 9 IKDFLRDLKMYITLRIKVARDHGFSKMSRQEIELYTKMPSDML 51
IKD+L D + I + +K+ + HG SK + + + + SD++
Sbjct: 122 IKDYLIDDSITIEVTVKITKMHGISKKALKSFDKSNEKFSDVV 164
>Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical
protein T21C9.6 protein.
Length = 1215
Score = 28.3 bits (60), Expect = 6.3
Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 9/120 (7%)
Query: 130 KRVIASLGSG-VHPSPKDVLACKDLFTKEPYQLSSLNYAHLGHLLKMH-------GLRKS 181
K ++ + G V P P + + +L ++S+ + L ++ H RK
Sbjct: 660 KEILTNANVGEVLPVPVNAMEAHNLTGMFDKVIASMTFQELNDVVPAHTSIGFSVAHRKI 719
Query: 182 IFRTSKLKYRAFLLLEMDKAI-IREGGVNILNAETLRNACHMRGLNGSNLPNQDMRNWLQ 240
F ++ R + L+E D+ I G + NAE + A H G P + M N ++
Sbjct: 720 FFNLGEVVLRIWELVEKDRITDIVIAGETLFNAEMFQQAAHQYGKVSPFFPLKRMFNMIK 779
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.326 0.140 0.430
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,642,061
Number of Sequences: 27539
Number of extensions: 267983
Number of successful extensions: 769
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 761
Number of HSP's gapped (non-prelim): 9
length of query: 276
length of database: 12,573,161
effective HSP length: 80
effective length of query: 196
effective length of database: 10,370,041
effective search space: 2032528036
effective search space used: 2032528036
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)
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