Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002135-TA|BGIBMGA002135-PA|IPR011685|LETM1-like
(276 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g65540.1 68414.m07435 calcium-binding EF hand family protein ... 73 2e-13
At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-r... 57 1e-08
At2g36370.1 68415.m04463 F-box family protein (FBL11) contains s... 29 4.5
At3g63150.1 68416.m07092 GTP-binding protein-related low similar... 28 6.0
At3g18850.2 68416.m02394 phospholipid/glycerol acyltransferase f... 28 6.0
At3g18850.1 68416.m02393 phospholipid/glycerol acyltransferase f... 28 6.0
At3g52450.1 68416.m05768 U-box domain-containing protein similar... 28 7.9
At3g19120.1 68416.m02428 expressed protein 28 7.9
At1g50120.1 68414.m05621 expressed protein 28 7.9
>At1g65540.1 68414.m07435 calcium-binding EF hand family protein
similar to leucine zipper-EF-hand containing
transmembrane protein 1 [Homo sapiens] GI:4235226;
contains Pfam profile PF00036: EF hand
Length = 736
Score = 73.3 bits (172), Expect = 2e-13
Identities = 68/262 (25%), Positives = 125/262 (47%), Gaps = 18/262 (6%)
Query: 7 VGIKDFLRDLKMYITLRIKVARDHGFSKMSRQEIELYTKMPSDMLRIAPVLILSAIPFGN 66
+G K D+++ + L +K+A G S+ RQ++ T+ +D+ R+ PV + +PF
Sbjct: 196 LGTKLLWADVRISVRLLVKLANGKGLSRRERQQL---TRTTADIFRLVPVAVFIIVPFME 252
Query: 67 YIIFPLAFLKPRTLLCSHFWSIQQKVEFSRQELTERLRHNK---PVFRSLQAQVEIIPDG 123
+++ L P +L S F ++ E ++ L R+ + K + + +V+ G
Sbjct: 253 FLLPVFLKLFP-NMLPSTFQDKMKEEEALKRRLNARMEYAKFLQDTVKEMAKEVQTSRSG 311
Query: 124 DIKLKWKRV---IASLGSGVHPSPKDVLACKDLFTKEPYQLSSLNYAHLGHLLKMHGLRK 180
+IK + + + + GV S ++L LF E L ++N + L ++ K G+
Sbjct: 312 EIKKTAEDLDGFMTKVRRGVGVSNDEILGFAKLFNDE-LTLDNINRSRLVNMCKYMGI-- 368
Query: 181 SIFRT-SKLKY---RAFLLLEMDKAIIREGGVNILNAETLRNACHMRGLNGSNLPNQDMR 236
S F T + L+Y + ++ D +I+ GV L+ LR AC RG+ ++MR
Sbjct: 369 SPFGTDAYLRYMLRKRLQEIKKDDKLIKAEGVESLSEAELRQACRERGMLQLG-SVEEMR 427
Query: 237 NWLQNWLSVSENIDRTSYSLLL 258
L +WL +S N S L+L
Sbjct: 428 EQLVDWLDLSLNHSVPSSLLIL 449
>At3g59820.1 68416.m06675 calcium-binding mitochondrial
protein-related contains weak similarity to
Calcium-binding mitochondrial protein Anon-60Da
(Swiss-Prot:P91927) [Drosophila melanogaster]
Length = 755
Score = 57.2 bits (132), Expect = 1e-08
Identities = 63/261 (24%), Positives = 118/261 (45%), Gaps = 16/261 (6%)
Query: 7 VGIKDFLRDLKMYITLRIKVARDHGFSKMSRQEIELYTKMPSDMLRIAPVLILSAIPFGN 66
+G K D ++ L +K+A G +SR+E + T+ +D+ R+ P + +PF
Sbjct: 217 LGTKLLWADTRISSRLLLKLA---GGKSLSRRERQQLTRTTADIFRLVPFAVFILVPFME 273
Query: 67 YIIFPLAFLKPRTLLCSHFWSIQQKVEFSRQELTERLRHNK---PVFRSLQAQVEIIPDG 123
+++ L P +L S F ++ E +++L R+ + K R + +V+ G
Sbjct: 274 FLLPVFLKLFP-NMLPSTFQDKMKEEEALKRKLLARIEYAKFLQETAREMAKEVKHSRTG 332
Query: 124 DIKLKWK---RVIASLGSGVHPSPKDVLACKDLFTKEPYQLSSLNYAHLGHLLKMHGLR- 179
++K + + + G ++L LF E L +++ L + K G+
Sbjct: 333 EVKQTAEDLDEFLDKVRRGQIVHNDELLGFAKLFNDE-LTLDNISRPRLVSMCKYMGISP 391
Query: 180 --KSIFRTSKLKYRAFLLLEMDKAIIREGGVNILNAETLRNACHMRGLNGSNLPNQDMRN 237
+ L+ R + E DK +IR GV+ L+ LR C RG+ G + ++MR
Sbjct: 392 YGTDAYLRYMLRKRLRSIKEDDK-LIRAEGVDSLSEAELREDCRERGMLGL-VSVEEMRQ 449
Query: 238 WLQNWLSVSENIDRTSYSLLL 258
L++W+ +S N S L+L
Sbjct: 450 QLRDWMDLSLNHSVPSSLLIL 470
>At2g36370.1 68415.m04463 F-box family protein (FBL11) contains
similarity to leucine-rich repeats containing F-box
protein FBL3 GI:5919219 from [Homo sapiens]
Length = 785
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 27 ARDHGFSKMSRQEIELYT---KMPSDML 51
++ HGFSK + Q IEL T KMPS L
Sbjct: 222 SKSHGFSKFADQSIELVTKLMKMPSTCL 249
>At3g63150.1 68416.m07092 GTP-binding protein-related low
similarity to SP|Q38912 RAC-like GTP binding protein
ARAC3 (GTP-binding protein ROP6) {Arabidopsis
thaliana}; contains Pfam profile PF00036: EF hand
(domain)
Length = 643
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 21 TLRIKVARDHGFSKMSRQEIELYTKMPSDMLRIAPVLILSAIPFGNYI 68
+LR+ VA D G K S P ++ R+ P + L A F +YI
Sbjct: 14 SLRVAVAGDKGTGKSSLISAVASETFPDNVPRVLPPITLPADAFPDYI 61
>At3g18850.2 68416.m02394 phospholipid/glycerol acyltransferase
family protein contains Pfam profile: PF01553
Acyltransferase
Length = 375
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 209 NILNAETLRNACHMRGLNGSNLPNQ--DMRNWLQNWLSVSENIDRTSYS 255
N+ E H+R +N + +PNQ D+ WL N + + + YS
Sbjct: 246 NVYGIEPSEVHIHIRRINLTQIPNQEKDINAWLMNTFQLKDQLLNDFYS 294
>At3g18850.1 68416.m02393 phospholipid/glycerol acyltransferase
family protein contains Pfam profile: PF01553
Acyltransferase
Length = 375
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 209 NILNAETLRNACHMRGLNGSNLPNQ--DMRNWLQNWLSVSENIDRTSYS 255
N+ E H+R +N + +PNQ D+ WL N + + + YS
Sbjct: 246 NVYGIEPSEVHIHIRRINLTQIPNQEKDINAWLMNTFQLKDQLLNDFYS 294
>At3g52450.1 68416.m05768 U-box domain-containing protein similar to
immediate-early fungal elicitor protein CMPG1
[Petroselinum crispum] GI:14582200; contains Pfam
profile PF04564: U-box domain
Length = 435
Score = 27.9 bits (59), Expect = 7.9
Identities = 36/159 (22%), Positives = 69/159 (43%), Gaps = 13/159 (8%)
Query: 104 RHNKPVFRSLQAQVEIIPDGDIKL---KWKRVIASLGSGVHPSPKDVLACKDLFTKEPYQ 160
+++ PV + + + ++ P+ ++ W + AS G P+PK + CK K +
Sbjct: 46 KNSCPVTKQVITETDLTPNHTLRRLIQSWCTLNASYGIERIPTPKPPI-CKSEIEKLIKE 104
Query: 161 LSSLNYAHLGHLLKMHGLRKSIFRTSKLKYRAFLLLEMDKAIIREGGVNILNAETLRNAC 220
SS +HL + + LR+ + + K R ++ A + E NI++
Sbjct: 105 SSS---SHLNQVKCLKRLRQIVSENTTNK-RC-----LEAAEVPEFLANIVSNSVDTYNS 155
Query: 221 HMRGLNGSNLPNQDMRNWLQNWLSVSENIDRTSYSLLLH 259
L+ SNL + N L+N S ++ + S+L H
Sbjct: 156 PSSSLSSSNLNDMCQSNMLENRFDSSRSLMDEALSVLYH 194
>At3g19120.1 68416.m02428 expressed protein
Length = 446
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 123 GDIKLKWKRVIASLGSGVHPSPKDVLAC 150
G +K +WK ++ SL GV+ +P+ ++AC
Sbjct: 361 GLLKARWK-ILQSLNVGVNHAPQTIVAC 387
>At1g50120.1 68414.m05621 expressed protein
Length = 532
Score = 27.9 bits (59), Expect = 7.9
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 14 RDLKMYITLRIKVARDHGFSKMSRQEIELYTKMPSDMLRIAPVLILSAIPFGNYIIFPLA 73
R L++ +TL + F SR+ TK+ SD + LI ++ F P++
Sbjct: 398 RCLEVSVTLETLETINRRFVHPSRRNSPTLTKVQSDHHEVVADLIQTSFLFSIPTDGPMS 457
Query: 74 FLKPRT----LLCSHFWSIQQKVEFSRQE 98
F PR +L F + + V+ SR E
Sbjct: 458 FSTPRVSVQWILRFEFLTTPKSVDLSRYE 486
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.326 0.140 0.430
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,451,347
Number of Sequences: 28952
Number of extensions: 261215
Number of successful extensions: 790
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 780
Number of HSP's gapped (non-prelim): 11
length of query: 276
length of database: 12,070,560
effective HSP length: 80
effective length of query: 196
effective length of database: 9,754,400
effective search space: 1911862400
effective search space used: 1911862400
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)
- SilkBase 1999-2023 -