GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002134-TA|BGIBMGA002134-PA|undefined
         (81 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   1.3  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    20   3.8  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        19   8.8  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 1.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 20  GEQKASRALREASEVIGDSPAA 41
           GE++A RA   A    GD+ AA
Sbjct: 269 GEEEAERAPAPAVRAAGDAAAA 290


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 22  QKASRALREASEVIGDSPAALQLRYLQTLNTI 53
           QK + A+ E  E   + PA +++   + LN +
Sbjct: 470 QKIAGAVEEDDEDAIEKPAPVKISVQEVLNRV 501


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 18.6 bits (36), Expect = 8.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 21 EQKASRALREASEVIGDSPAALQLRY 46
          +Q+  +A R A   I + PA+  LR+
Sbjct: 53 QQQPQQARRRAFVKIIEQPASKALRF 78


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.130    0.338 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,531
Number of Sequences: 317
Number of extensions: 279
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 81
length of database: 114,650
effective HSP length: 46
effective length of query: 35
effective length of database: 100,068
effective search space:  3502380
effective search space used:  3502380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.3 bits)
S2: 36 (18.6 bits)