Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002134-TA|BGIBMGA002134-PA|undefined
(81 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 1.3
SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit... 23 5.1
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 23 5.1
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||... 23 6.7
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 23 6.7
SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr... 22 8.9
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ... 22 8.9
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|... 22 8.9
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz... 22 8.9
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 22 8.9
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.0 bits (52), Expect = 1.3
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 22 QKASRALREASEVIGDSPAALQL--RYLQTLNTISAEKNSTIVFPLPIDLLTYFIK 75
+ AS S G +P+ L ++ + L I A NS IV+ L D++ +F+K
Sbjct: 2294 KSASAVYHNVSSFKGSTPSLWNLLNQFSKFLIEI-ASANSNIVYKLSYDVIRHFLK 2348
>SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit
subunit Ker1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 23.0 bits (47), Expect = 5.1
Identities = 11/51 (21%), Positives = 26/51 (50%)
Query: 28 LREASEVIGDSPAALQLRYLQTLNTISAEKNSTIVFPLPIDLLTYFIKARE 78
LR++ ++ D+ + RY+QT+ EK+ + ++ + ++K E
Sbjct: 11 LRKSEKLDKDASSKFLNRYIQTIERFQDEKSGSESVLSQLNRVLMYLKGEE 61
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 23.0 bits (47), Expect = 5.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 42 LQLRYLQTLNTISAEKNSTIVFPLPIDLLTYFIKAREES 80
+QLR L++ S + T+ ++ L YF A E+S
Sbjct: 808 IQLRKLESPLNKSPSREHTVYISTSLEPLKYFYDAIEQS 846
>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 462
Score = 22.6 bits (46), Expect = 6.7
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 22 QKASRALREASEVIG-DSPAALQLRYLQTL 50
Q +S +++ V G D P LQL+YLQ +
Sbjct: 3 QMSSASVKFPDSVPGVDYPKQLQLKYLQVI 32
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 22.6 bits (46), Expect = 6.7
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 43 QLRYLQTLNTISAEKNSTIVFPLPIDLLTYF 73
+LR+ L +++A NS++VF ++ F
Sbjct: 238 KLRFQSLLVSLTATNNSSVVFEAATSVINVF 268
>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 279
Score = 22.2 bits (45), Expect = 8.9
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 22 QKASRALREASEVIGDSPAALQLRYLQTLNTIS 54
Q RA + E I + P ++LR L+T I+
Sbjct: 224 QGEGRAAQLIGEAIKNKPGFIELRKLETAREIA 256
>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 388
Score = 22.2 bits (45), Expect = 8.9
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 37 DSPAALQLRYLQTLNTISAEKNSTIV 62
DSP A+ +R+L + N S E + ++
Sbjct: 77 DSPDAILVRFLASCNNDSHEASQKLI 102
>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 468
Score = 22.2 bits (45), Expect = 8.9
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 35 IGDSPA-ALQLRYLQTLNTISAEKNSTIVFPLPIDLLTYFI 74
+ DSP + + ++A + + FP+PI LL +F+
Sbjct: 255 LNDSPRNPVSRTNAEGFKALNASFDGSYKFPIPIVLLCFFL 295
>SPBC1A4.06c |||mitochondrial matrix protein import
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 22.2 bits (45), Expect = 8.9
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 30 EASEVIGDSPAALQLRYLQTLNTISAEKNSTIVFPLPIDLL 70
E+SEV+ + RYL I+ + S ++ LP++L+
Sbjct: 276 ESSEVLKSMDPSDNSRYLSFHQNITKDSISRLLNGLPLNLV 316
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 22.2 bits (45), Expect = 8.9
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 28 LREASEVIGDSPAALQLRYLQTLNTISAEKNSTIVFPLPIDLLT 71
L E + ++ SP + +TLN + KN+ PL + L T
Sbjct: 219 LTEDNSILPVSPTRDSTKSHKTLNFSPSRKNNLNARPLTMSLYT 262
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.130 0.338
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,655
Number of Sequences: 5004
Number of extensions: 5815
Number of successful extensions: 29
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 10
length of query: 81
length of database: 2,362,478
effective HSP length: 60
effective length of query: 21
effective length of database: 2,062,238
effective search space: 43306998
effective search space used: 43306998
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)
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