GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002134-TA|BGIBMGA002134-PA|undefined
         (81 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32267| Best HMM Match : No HMM Matches (HMM E-Value=.)              88   1e-18
SB_31051| Best HMM Match : Band_7 (HMM E-Value=5e-14)                  85   6e-18
SB_10636| Best HMM Match : Band_7 (HMM E-Value=1.1e-05)                85   1e-17
SB_54318| Best HMM Match : TPR_2 (HMM E-Value=2.2e-23)                 27   2.1  
SB_23490| Best HMM Match : DDE (HMM E-Value=2.1e-33)                   27   2.1  
SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.9  

>SB_32267| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 87.8 bits (208), Expect = 1e-18
 Identities = 41/55 (74%), Positives = 47/55 (85%)

Query: 20 GEQKASRALREASEVIGDSPAALQLRYLQTLNTISAEKNSTIVFPLPIDLLTYFI 74
          GE  ASRAL+EAS++I +SP ALQLRYLQTL TISAEKNSTI+FPLPID +  FI
Sbjct: 6  GEMNASRALKEASDIISESPQALQLRYLQTLTTISAEKNSTIIFPLPIDFIAKFI 60


>SB_31051| Best HMM Match : Band_7 (HMM E-Value=5e-14)
          Length = 217

 Score = 85.4 bits (202), Expect = 6e-18
 Identities = 40/57 (70%), Positives = 49/57 (85%)

Query: 20  GEQKASRALREASEVIGDSPAALQLRYLQTLNTISAEKNSTIVFPLPIDLLTYFIKA 76
           GE K+S AL+ A+EV+  SP+ALQLRYLQTLNTISAEKNSTI+FPLP++LL  F+ A
Sbjct: 160 GEMKSSHALKNAAEVLDGSPSALQLRYLQTLNTISAEKNSTIIFPLPMNLLNRFMNA 216


>SB_10636| Best HMM Match : Band_7 (HMM E-Value=1.1e-05)
          Length = 152

 Score = 84.6 bits (200), Expect = 1e-17
 Identities = 39/52 (75%), Positives = 46/52 (88%)

Query: 20  GEQKASRALREASEVIGDSPAALQLRYLQTLNTISAEKNSTIVFPLPIDLLT 71
           GE  ASR+L+EAS++I +SP ALQLRYLQTL TISAEKNSTI+FPLPID L+
Sbjct: 96  GEMNASRSLKEASDIISESPQALQLRYLQTLTTISAEKNSTIIFPLPIDFLS 147


>SB_54318| Best HMM Match : TPR_2 (HMM E-Value=2.2e-23)
          Length = 640

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/56 (28%), Positives = 27/56 (48%)

Query: 24  ASRALREASEVIGDSPAALQLRYLQTLNTISAEKNSTIVFPLPIDLLTYFIKAREE 79
           +++A+  A   +G   A+L L ++ TLN +       +V     +   YF KA EE
Sbjct: 444 SAKAVELAKRAVGIYEASLGLSHINTLNALENVALGYLVMDKKDEAHEYFKKAGEE 499


>SB_23490| Best HMM Match : DDE (HMM E-Value=2.1e-33)
          Length = 497

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 30  EASEVIGDSPAALQLRYLQTLNTISAEKNSTIVFPLPIDL 69
           E   VI D+  AL   + Q L   S EKN T +FP+  +L
Sbjct: 457 EPMSVIKDAKTALY--WAQQLKLFSLEKNMTGIFPISSEL 494


>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2250

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 32   SEVIGDSPAALQLRYLQTLNTISAEKNSTIVFPLP 66
            SE+I D   + ++ +++T    +  +  TI FP+P
Sbjct: 1414 SEIIFDGANSTKMSFIETRKEENLNQKDTISFPIP 1448


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.130    0.338 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,490,817
Number of Sequences: 59808
Number of extensions: 35586
Number of successful extensions: 57
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 52
Number of HSP's gapped (non-prelim): 6
length of query: 81
length of database: 16,821,457
effective HSP length: 59
effective length of query: 22
effective length of database: 13,292,785
effective search space: 292441270
effective search space used: 292441270
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)