GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002134-TA|BGIBMGA002134-PA|undefined
         (81 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12120.1 68417.m01924 cytokinesis-related Sec1 protein, putat...    27   1.2  
At1g20640.2 68414.m02584 RWP-RK domain-containing protein simila...    26   3.6  
At1g20640.1 68414.m02583 RWP-RK domain-containing protein simila...    26   3.6  
At5g57750.1 68418.m07219 zinc finger (C3HC4-type RING finger) fa...    25   8.3  
At5g44690.1 68418.m05476 hypothetical protein                          25   8.3  
At5g20310.1 68418.m02417 hypothetical protein                          25   8.3  

>At4g12120.1 68417.m01924 cytokinesis-related Sec1 protein, putative
           similar to cytokinesis-related Sec1 protein KEULE
           [Arabidopsis thaliana] gi|12659318|gb|AAK01291; contains
           Pfam domain, PF00995: Sec1 family
          Length = 662

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 21  EQKASRALREASEVIGDSPAALQ-LRYLQTLNTISAEKNSTIVFPLPIDLLTYFIKAREE 79
           E +  R + E +++ GD   A+  +R L  ++T   +K++T  FPL  D+L     AR +
Sbjct: 448 EGEKGRKMMELAKLSGDDVVAVNNMRLLGPVHT-ECKKSTTGSFPLKFDVLKTKRAARRD 506

Query: 80  SV 81
            V
Sbjct: 507 RV 508


>At1g20640.2 68414.m02584 RWP-RK domain-containing protein similar
           to nodule inception protein GI:6448579 from (Lotus
           japonicus); contains Pfam profile: PF02042 RWP-RK domain
          Length = 844

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 21  EQKASRALREASEVIGDSPAALQLRYLQTLNTISAEKNSTIVF 63
           E+  +  +  ASE+ G+SP    L  +Q  N  S  +N  +VF
Sbjct: 467 EEIVTPKIENASELHGNSPWNASLEEIQRSNNTSNPQNLGLVF 509


>At1g20640.1 68414.m02583 RWP-RK domain-containing protein similar
           to nodule inception protein GI:6448579 from (Lotus
           japonicus); contains Pfam profile: PF02042 RWP-RK domain
          Length = 844

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 21  EQKASRALREASEVIGDSPAALQLRYLQTLNTISAEKNSTIVF 63
           E+  +  +  ASE+ G+SP    L  +Q  N  S  +N  +VF
Sbjct: 467 EEIVTPKIENASELHGNSPWNASLEEIQRSNNTSNPQNLGLVF 509


>At5g57750.1 68418.m07219 zinc finger (C3HC4-type RING finger)
           family protein similar to RING-H2 zinc finger protein
           ATL4 [Arabidopsis thaliana] GI:4928399; contains Pfam
           profile PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 210

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 28  LREASEVIGDSPAALQLRYLQTLNTISAEKNSTIVFPLPI 67
           L +A + I +S  ALQ RY    N   AE + + +  LP+
Sbjct: 67  LDDAYDGITESSTALQGRYQTRFNLHDAEIDQSFIDALPL 106


>At5g44690.1 68418.m05476 hypothetical protein
          Length = 684

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 54  SAEKNSTIVFPLPIDLLTY 72
           S E+N +I F +PID L Y
Sbjct: 627 SLERNCSICFEMPIDSLLY 645


>At5g20310.1 68418.m02417 hypothetical protein
          Length = 394

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)

Query: 50  LNTISAEKNSTIVFPL-PID 68
           LN++S EKN T+  PL P+D
Sbjct: 261 LNSLSDEKNCTLASPLSPVD 280


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.130    0.338 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,083,504
Number of Sequences: 28952
Number of extensions: 27126
Number of successful extensions: 62
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 57
Number of HSP's gapped (non-prelim): 6
length of query: 81
length of database: 12,070,560
effective HSP length: 60
effective length of query: 21
effective length of database: 10,333,440
effective search space: 217002240
effective search space used: 217002240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)