GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002133-TA|BGIBMGA002133-PA|undefined
         (173 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   3.5  
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo...    25   4.7  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   8.1  
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    25   8.1  

>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 70  GNSNNPVNSMIGSGAGPNNCANDWLLVPCAANVGRIQPNQALCTDRICGGTFSADLSMQA 129
           G+SN+ +  +I S    NN A+          V R+Q      T   CG  F++ + + +
Sbjct: 79  GSSNSSIQDLIDSVGNSNNAASSNPTSTVTEYVDRVQTVTEYVT-LSCGQAFTSTVDISS 137

Query: 130 SQVLSTV 136
           S   S +
Sbjct: 138 STSSSVI 144


>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 21  SFNYDPASGFQLSNQDYGICIRMERNF 47
           S  YD    F LS   +G C+R  R+F
Sbjct: 283 SLGYDRLGVFNLSIHAHGECVRFTRSF 309


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 45  RNFCGILYTACPDQVN 60
           R FCG LY A P+ +N
Sbjct: 298 RTFCGSLYFAAPELLN 313


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 3/35 (8%)

Query: 83  GAGPNNCANDWLLVPCAANVGRIQPNQALCTDRIC 117
           G    NC  +W  +PC   VG ++P + +   + C
Sbjct: 263 GCDNENCKREWFHLPC---VGLVEPPKGIWYCKEC 294


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.136    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 841,161
Number of Sequences: 5004
Number of extensions: 32712
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 63
Number of HSP's gapped (non-prelim): 4
length of query: 173
length of database: 2,362,478
effective HSP length: 68
effective length of query: 105
effective length of database: 2,022,206
effective search space: 212331630
effective search space used: 212331630
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)