GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002133-TA|BGIBMGA002133-PA|undefined
         (173 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0526 + 21771519-21771607,21771685-21771810,21771890-217720...    28   4.7  
05_07_0295 - 29051375-29052135,29053368-29053533                       28   4.7  
01_01_0385 + 2981293-2981345,2981803-2981851,2982215-2984953           28   4.7  
03_02_0871 - 11978725-11978986,11979265-11979422,11979501-119797...    27   6.2  

>06_03_0526 +
           21771519-21771607,21771685-21771810,21771890-21772010,
           21772123-21772851,21772954-21773349,21774594-21774665,
           21774741-21774803,21775236-21775337
          Length = 565

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/26 (46%), Positives = 13/26 (50%)

Query: 94  LLVPCAANVGRIQPNQALCTDRICGG 119
           L  P AA  G +QPN   C D   GG
Sbjct: 16  LWAPAAAIAGGVQPNHLFCLDAWIGG 41


>05_07_0295 - 29051375-29052135,29053368-29053533
          Length = 308

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 49  GILYTACPDQVNNRSRSFTLSGNSNNPVNSMIGS 82
           G+++T+ PD++ +  + F  S +S +P  S  GS
Sbjct: 96  GVMWTSSPDRLEDPRKPFQYSNSSGSPCFSESGS 129


>01_01_0385 + 2981293-2981345,2981803-2981851,2982215-2984953
          Length = 946

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 5/38 (13%)

Query: 53  TACPDQVNNRSRSFTLSGNSNNPVNSMIGSGAGPNNCA 90
           +A P  V +RS SFT+  N+N P     G GA P   A
Sbjct: 539 SAPPSAVGSRSPSFTIDTNANTP-----GGGATPGMAA 571


>03_02_0871 -
           11978725-11978986,11979265-11979422,11979501-11979705,
           11979797-11980086,11980539-11980692,11980793-11980881,
           11981567-11981634,11982082-11982352
          Length = 498

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 78  SMIGSGAGPNNCANDWLLVPCAANVGRIQP 107
           S +G G G N+ A+  + V  A  VGR+ P
Sbjct: 55  SCLGGGGGSNSSASSAVTVAAADEVGRLAP 84


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.136    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,477,932
Number of Sequences: 37544
Number of extensions: 222478
Number of successful extensions: 398
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 395
Number of HSP's gapped (non-prelim): 4
length of query: 173
length of database: 14,793,348
effective HSP length: 77
effective length of query: 96
effective length of database: 11,902,460
effective search space: 1142636160
effective search space used: 1142636160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)