GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002133-TA|BGIBMGA002133-PA|undefined
         (173 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18397| Best HMM Match : Peptidase_A17 (HMM E-Value=8.1e-32)         28   4.8  
SB_35488| Best HMM Match : Peptidase_A17 (HMM E-Value=8.1e-32)         28   4.8  
SB_11559| Best HMM Match : Peptidase_A17 (HMM E-Value=3.8e-33)         28   4.8  
SB_39188| Best HMM Match : Ion_trans (HMM E-Value=4.9e-20)             27   6.4  
SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)              27   8.4  

>SB_18397| Best HMM Match : Peptidase_A17 (HMM E-Value=8.1e-32)
          Length = 1626

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 57  DQVNNRSRSFTLSGNSNNPVNSMIGSGAGPNNCANDWLLVPCAANVGRIQPNQALCTDRI 116
           DQV+    +  ++  +  P   M+ SGAG +  +++ LL        R++       +++
Sbjct: 362 DQVHTTLHATAIANVNGIPARIMLDSGAGSSYISSN-LLTKLNLKPSRVERR---VIEQM 417

Query: 117 CGGTFSADLSMQASQVLSTV-KPFRLWFHADNVEAPI 152
             GT    + +   Q+ STV   FR+  H  N E PI
Sbjct: 418 Y-GTVDKQVELYKIQLGSTVLDSFRMELHCINAEKPI 453


>SB_35488| Best HMM Match : Peptidase_A17 (HMM E-Value=8.1e-32)
          Length = 1019

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 57  DQVNNRSRSFTLSGNSNNPVNSMIGSGAGPNNCANDWLLVPCAANVGRIQPNQALCTDRI 116
           DQV+    +  ++  +  P   M+ SGAG +  +++ LL        R++       +++
Sbjct: 49  DQVHTTLHATAIANVNGIPARIMLDSGAGSSYISSN-LLTKLNLKPSRVERR---VIEQM 104

Query: 117 CGGTFSADLSMQASQVLSTV-KPFRLWFHADNVEAPI 152
             GT    + +   Q+ STV   FR+  H  N E PI
Sbjct: 105 Y-GTVDKQVELYKIQLGSTVLDSFRMELHCINAEKPI 140


>SB_11559| Best HMM Match : Peptidase_A17 (HMM E-Value=3.8e-33)
          Length = 1485

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 57  DQVNNRSRSFTLSGNSNNPVNSMIGSGAGPNNCANDWLLVPCAANVGRIQPNQALCTDRI 116
           DQV+    +  ++  +  P   M+ SGAG +  +++ LL        R++       +++
Sbjct: 256 DQVHTTLHATAIANVNGIPARIMLDSGAGSSYISSN-LLTKLNLKPSRVERR---VIEQM 311

Query: 117 CGGTFSADLSMQASQVLSTV-KPFRLWFHADNVEAPI 152
             GT    + +   Q+ STV   FR+  H  N E PI
Sbjct: 312 Y-GTVDKQVELYKIQLGSTVLDSFRMELHCINAEKPI 347


>SB_39188| Best HMM Match : Ion_trans (HMM E-Value=4.9e-20)
          Length = 551

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 9   LQYYTGVSGQLRSFNYDPASGFQLSNQDYGICIRMERNFCGILYTACPDQVNNRSRSFTL 68
           +QY+      LRS N      F+ S   + I I +    CG  Y AC +  + + +  T 
Sbjct: 143 MQYFHARDNDLRS-NTTTVRAFRYSAMSF-IIIHLFA--CGWYYLACDNMADGKGKCITK 198

Query: 69  SGNSNNPVNSMIGSGAGP 86
           S  +      M+  GA P
Sbjct: 199 SWANLKAAKKMLEFGAFP 216


>SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)
          Length = 663

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 130 SQVLSTVKPFRLWFHADNVEAPIDVDNRGFCLNF 163
           S ++ T KPFRL F   N E  + ++ RG  LNF
Sbjct: 144 SNIIVTYKPFRLDFLVGN-EVVVSINTRGL-LNF 175


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.136    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,236,192
Number of Sequences: 59808
Number of extensions: 248903
Number of successful extensions: 500
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 500
Number of HSP's gapped (non-prelim): 5
length of query: 173
length of database: 16,821,457
effective HSP length: 77
effective length of query: 96
effective length of database: 12,216,241
effective search space: 1172759136
effective search space used: 1172759136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)