GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002133-TA|BGIBMGA002133-PA|undefined
         (173 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50741-1|CAA90609.1|  395|Caenorhabditis elegans Hypothetical pr...    30   0.77 
U28993-3|AAT81196.1|  635|Caenorhabditis elegans Hypothetical pr...    28   3.1  
U28993-2|AAK31497.1|  720|Caenorhabditis elegans Hypothetical pr...    28   3.1  

>Z50741-1|CAA90609.1|  395|Caenorhabditis elegans Hypothetical
          protein F55G7.1 protein.
          Length = 395

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 9  LQYYTGVSGQLRSFNYDPASGFQLSNQDYGICIRMERNFCGILYTACPDQVNNRSRSFTL 68
          L+ Y G     + F Y P    Q +  DYG  I +  NF  + +++ P  V+N ++SF  
Sbjct: 24 LRLYEGYCRARQQFGY-PVELPQFN--DYGQVINLPPNFRRVPFSSQPQHVSN-AQSFHQ 79

Query: 69 SGNSNN 74
          S NSN+
Sbjct: 80 SPNSND 85


>U28993-3|AAT81196.1|  635|Caenorhabditis elegans Hypothetical
           protein F22D3.2b protein.
          Length = 635

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 104 RIQPNQALCTDRICGGTFSADLSMQASQVLSTVKPFRLWFHADNVEAPIDVDNRGFCLNF 163
           RI P+  +  + I  G F   L ++ S++      FR    AD      D DN GFC  +
Sbjct: 183 RIPPSSTVLQEPIEDGAFEQPLVLKISEIYFENIDFRAAEEADGYVIFGDTDN-GFCFAY 241

Query: 164 V 164
           +
Sbjct: 242 I 242


>U28993-2|AAK31497.1|  720|Caenorhabditis elegans Hypothetical
           protein F22D3.2a protein.
          Length = 720

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 104 RIQPNQALCTDRICGGTFSADLSMQASQVLSTVKPFRLWFHADNVEAPIDVDNRGFCLNF 163
           RI P+  +  + I  G F   L ++ S++      FR    AD      D DN GFC  +
Sbjct: 183 RIPPSSTVLQEPIEDGAFEQPLVLKISEIYFENIDFRAAEEADGYVIFGDTDN-GFCFAY 241

Query: 164 V 164
           +
Sbjct: 242 I 242


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.136    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,630,979
Number of Sequences: 27539
Number of extensions: 187775
Number of successful extensions: 355
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 3
length of query: 173
length of database: 12,573,161
effective HSP length: 77
effective length of query: 96
effective length of database: 10,452,658
effective search space: 1003455168
effective search space used: 1003455168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)