GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002133-TA|BGIBMGA002133-PA|undefined
         (173 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   5.0  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   6.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.7  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 14/53 (26%), Positives = 22/53 (41%)

Query: 40  CIRMERNFCGILYTACPDQVNNRSRSFTLSGNSNNPVNSMIGSGAGPNNCAND 92
           C R   N       A  +  NN + +   + N+N   ++  G+GA  NN   D
Sbjct: 219 CQRNSNNSTITAGNANTNASNNNNNNNNNNNNNNGANDNGNGNGASNNNNNGD 271


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 53  TACPDQVNNRSRSFTLSGNSNNPVNSMIGSGAGPNNCAND 92
           T C +   N +   T + N NN  N+   +    NN  ND
Sbjct: 412 THCVNNNQNDNIQNTNNQNDNNQKNNKKNANNQKNNNQND 451


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 67  TLSGNSNNPVNSMIGSGA 84
           TLS + ++ VNSM  SGA
Sbjct: 371 TLSESYSSYVNSMYASGA 388


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,877
Number of Sequences: 429
Number of extensions: 2072
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 173
length of database: 140,377
effective HSP length: 54
effective length of query: 119
effective length of database: 117,211
effective search space: 13948109
effective search space used: 13948109
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)