GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002132-TA|BGIBMGA002132-PA|IPR000859|CUB
         (205 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    24   0.99 
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    22   4.0  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    22   4.0  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   7.0  
AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450 ...    21   7.0  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   9.2  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.8 bits (49), Expect = 0.99
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 86  DNGTCMTARE---CSTRGGSANGYCANGYGLCCIFMTSCGSTTSENGTYFVSSAYPSSYD 142
           + GTC+       C+ + G     C N   LC       G+T  ++ T++     P  Y 
Sbjct: 34  NGGTCIDGINSYICTCKPGFTGSNCQNRINLCDSSPCLNGATCQDHTTHYTCHC-PYGYT 92

Query: 143 G 143
           G
Sbjct: 93  G 93


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 116 IFMTSCGSTTSENGTYFVSS 135
           +    C +TT+E  TYF+ +
Sbjct: 175 VLALECNNTTAEGFTYFLGN 194


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 116 IFMTSCGSTTSENGTYFVSS 135
           +    C +TT+E  TYF+ +
Sbjct: 175 VLALECNNTTAEGFTYFLGN 194


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 166 DRFTIAGPEPINHVCNQDQFIVSGGNPVP 194
           D F    P   ++ C+ D  ++S GN  P
Sbjct: 5   DHFDRESPNIDHNSCSSDDTVLSVGNENP 33


>AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 127

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 181 NQDQFIVSGGNPVPAICGV 199
           NQD  + SG   VPA C V
Sbjct: 70  NQDLKLASGDYTVPAGCTV 88


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
          protein.
          Length = 325

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 9/13 (69%), Positives = 9/13 (69%)

Query: 72 VVTFPNGGCAGAS 84
          VVT P  GCA AS
Sbjct: 49 VVTTPRWGCARAS 61


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.137    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,675
Number of Sequences: 317
Number of extensions: 2363
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 205
length of database: 114,650
effective HSP length: 54
effective length of query: 151
effective length of database: 97,532
effective search space: 14727332
effective search space used: 14727332
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 41 (20.6 bits)