GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002132-TA|BGIBMGA002132-PA|IPR000859|CUB
         (205 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    30   0.21 
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    27   2.6  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    25   7.9  

>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 116 IFMTSCGSTTSENGTYFVSSAYPSSYDGTGSCELTVIKSHPDVCQIRLDFDRFTIAGPEP 175
           IFM+  GS  + + +Y + S  PS  DG    ++  + S PD+ QI + +D F +   + 
Sbjct: 443 IFMSLDGSLCALDESYNLLSYLPS--DGA---QVETLYSFPDLDQIYVAYDNFQLLNWDV 497

Query: 176 INHVCNQDQF 185
           ++  C++  +
Sbjct: 498 VDQKCSEGNY 507


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/44 (31%), Positives = 20/44 (45%)

Query: 80  CAGASGDNGTCMTARECSTRGGSANGYCANGYGLCCIFMTSCGS 123
           C+    D+G  M A   +TR    NG      GL  IF+ + G+
Sbjct: 257 CSWGPADDGRAMDAPNTATRRALMNGVLNGRNGLGSIFVFASGN 300


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1095

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 6    LPILFRFIELATSQDAKEMVHGTGMLNGVSLPKLNRSYKKNYYDIKQERRFW 57
            LP LF+ +EL  ++D +E ++ T  +  V++ K+ R   +   D+ +   +W
Sbjct: 952  LPALFKMLELPDARD-EEQIYATENI-CVAICKICRFCSQRVQDLDKVVTYW 1001


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.137    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,027,586
Number of Sequences: 5004
Number of extensions: 44003
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 62
Number of HSP's gapped (non-prelim): 3
length of query: 205
length of database: 2,362,478
effective HSP length: 70
effective length of query: 135
effective length of database: 2,012,198
effective search space: 271646730
effective search space used: 271646730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)