Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002132-TA|BGIBMGA002132-PA|IPR000859|CUB
(205 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0377 - 4970034-4970687 35 0.053
08_02_1478 - 27386280-27387046,27388154-27388201,27388631-27388724 29 3.5
07_01_0050 - 402808-402819,402920-402922,402999-403010,403832-40... 29 3.5
06_03_0941 + 26179682-26182327 28 4.6
12_02_0590 - 20853040-20853081,20853694-20853918,20854995-208558... 28 6.1
03_06_0072 - 31469595-31469684,31469762-31469848,31469968-314700... 28 6.1
02_04_0386 - 22529291-22529418,22529860-22529941 28 6.1
12_01_0238 - 1789114-1790211 27 8.1
11_06_0425 - 23365108-23366028,23366182-23366340,23366445-233666... 27 8.1
11_04_0060 + 12984831-12985218,12985364-12985753,12986090-12986478 27 8.1
08_01_0161 + 1281704-1281958 27 8.1
03_05_0055 - 20316184-20317349,20317786-20317926,20318097-203182... 27 8.1
02_01_0088 - 627825-628984,629339-629509,629612-630416 27 8.1
>04_01_0377 - 4970034-4970687
Length = 217
Score = 34.7 bits (76), Expect = 0.053
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 82 GASGDNGTCMTARECSTRGGSA---NGYCANGYGLCCIFMTSCGS 123
G +G C +++ C ++GG A N C + YG C CGS
Sbjct: 50 GTGCQSGACCSSQRCGSQGGGATCSNNQCCSQYGYCGFGSEYCGS 94
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 82 GASGDNGTCMTARECSTRGGS---ANGYCANGYGLCCIFMTSCGSTTSENGTY 131
G +G C + C + G N +C + G C + CGS G Y
Sbjct: 136 GNGCQSGACCPEKRCGKQAGGDKCPNNFCCSAGGYCGLGGNYCGSGCQSGGCY 188
>08_02_1478 - 27386280-27387046,27388154-27388201,27388631-27388724
Length = 302
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 74 TFPNGGCAGASGDNGTCMTARECSTRGGSANGY 106
TFP+ C D+G +T +C RGGS +G+
Sbjct: 89 TFPD--CGFQLPDSGVVLTCVDCFLRGGSLHGF 119
>07_01_0050 -
402808-402819,402920-402922,402999-403010,403832-404467
Length = 220
Score = 28.7 bits (61), Expect = 3.5
Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 8/96 (8%)
Query: 59 AAPKESRFLSLFTVVTFPNGGCAGASGDNGTCMTARECSTRGGSANGYCANGYGLCCIFM 118
++P ++L+ NG G + T T RE S GG+ A GY +
Sbjct: 99 SSPTLMMCVNLYFTAGENNGSTIAVIGHDDTTATVRELSVVGGTGKFRMATGYVVWKTAS 158
Query: 119 TSCGS--------TTSENGTYFVSSAYPSSYDGTGS 146
S + T+ N T +SA S DG GS
Sbjct: 159 MSASTGVFELDVYVTTPNATTIDASAPVSPLDGGGS 194
>06_03_0941 + 26179682-26182327
Length = 881
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 97 STRGGSANGYCANGYGLCCIFMTSCGSTTSENGTYFVSSAYPSSYDGTGSCELTVIKSH 155
+ RG +GY A G+G + + NGT V+S + DG G E + +H
Sbjct: 516 AARGERKSGYLAVGFGSAMVNSYAYVGWIDGNGTGHVASYFIDGEDGAGVHETSENLTH 574
>12_02_0590 -
20853040-20853081,20853694-20853918,20854995-20855886,
20856120-20856122,20856284-20856513
Length = 463
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 82 GASGDNGTCMTARECSTRGGSANGYCANGYGL--CCI 116
G G G + R S GG+A G A G+G+ CC+
Sbjct: 17 GCGGGGGGVVVVRRPSWDGGAAVGGRAKGFGVVRCCV 53
>03_06_0072 -
31469595-31469684,31469762-31469848,31469968-31470036,
31470117-31470185,31470269-31471306
Length = 450
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/61 (22%), Positives = 27/61 (44%)
Query: 76 PNGGCAGASGDNGTCMTARECSTRGGSANGYCANGYGLCCIFMTSCGSTTSENGTYFVSS 135
P A+G + + +R C+T+ + + GL +F + GS T G +S+
Sbjct: 85 PAASAIAANGGGHSLLLSRSCATKAPVNDPPSSLAIGLLMVFTSGMGSATGRVGASSLSA 144
Query: 136 A 136
+
Sbjct: 145 S 145
>02_04_0386 - 22529291-22529418,22529860-22529941
Length = 69
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 81 AGASGDNGTCMTARECSTRGGSANGYCANGYGLCCIFMTSC 121
A A G G C + C G YC+ G CC + C
Sbjct: 25 ASADGKCGPC-NCKGCCDYDGKCMSYCSGHSGPCCKWKGKC 64
>12_01_0238 - 1789114-1790211
Length = 365
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 96 CSTRGGSANGYCANGYGLCCIFMTSCGSTTSENGTYF---VSSAYPSSYDG 143
CS GG CC T T+ Y+ V + P +YDG
Sbjct: 212 CSYSGGGETSQATASMDYCCSTTTHTADDTANAAAYYYGDVDAIKPDAYDG 262
>11_06_0425 -
23365108-23366028,23366182-23366340,23366445-23366640,
23366995-23367527,23367817-23368272,23368507-23368758,
23368890-23369007,23369836-23369993
Length = 930
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 77 NGGCAGASGDNGTCMTARECSTRGGSANGYCANGYGLCC 115
+GGC G G A E ST G + +G C +G G C
Sbjct: 883 SGGCGGGCGGG----VAMESSTVGHAKSGGCGSGCGGGC 917
>11_04_0060 + 12984831-12985218,12985364-12985753,12986090-12986478
Length = 388
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 80 CAGASGDNGTCMTARECSTRGGSANGYCANG 110
C G C RE + G+ NGYC G
Sbjct: 216 CGGTGHSRNDCAETREEAMYMGNNNGYCPQG 246
>08_01_0161 + 1281704-1281958
Length = 84
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 78 GGCAGASGDNGTCMTARECSTRGGSANGYCANGYG 112
G C G SG G + R CS +A+GYCA +G
Sbjct: 34 GRCGGCSG--GAAL--RPCSAVRDAADGYCAATHG 64
>03_05_0055 -
20316184-20317349,20317786-20317926,20318097-20318222,
20318382-20318429,20318536-20318640,20318746-20318890
Length = 576
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 11 RFIELATSQDAKEMVHGTGMLNGVSLPK 38
RF L S D VHG G+ N V LP+
Sbjct: 450 RFARLVNSVDVMMGVHGAGLTNCVFLPQ 477
>02_01_0088 - 627825-628984,629339-629509,629612-630416
Length = 711
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 77 NGGCAGASGDNGTCMTARECSTRGGSANGYCANGYG 112
N G AG G C EC + G +G C N G
Sbjct: 254 NNGFAGNPYLEGGCQDINECESPGQYCHGICDNTIG 289
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.137 0.438
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,167,444
Number of Sequences: 37544
Number of extensions: 331590
Number of successful extensions: 697
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 690
Number of HSP's gapped (non-prelim): 20
length of query: 205
length of database: 14,793,348
effective HSP length: 79
effective length of query: 126
effective length of database: 11,827,372
effective search space: 1490248872
effective search space used: 1490248872
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)
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