GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002132-TA|BGIBMGA002132-PA|IPR000859|CUB
         (205 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal...    26   0.93 
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    24   2.8  
AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific tran...    24   3.7  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    23   6.5  

>AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal
           growth factor receptorprotein.
          Length = 1433

 Score = 25.8 bits (54), Expect = 0.93
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 8/43 (18%)

Query: 80  CAGASGDN-GTCMTAR-------ECSTRGGSANGYCANGYGLC 114
           C G + DN G+CM  +       EC T   + NG C N +  C
Sbjct: 530 CYGPNEDNCGSCMNVKDGRFCVAECPTTKHAMNGTCINCHKTC 572


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 15/63 (23%)

Query: 84  SGDNGTCMTARECSTRGGSANGYCANGYGLCCIFMTSCGSTTSENGTYFVSSAYPSSYDG 143
           +G+NG  MT       GGSA G                GST S N     SS   SS+ G
Sbjct: 937 AGNNGVIMTGVGGGGGGGSAGG---------------AGSTISNNTNSSSSSGKKSSHSG 981

Query: 144 TGS 146
           T S
Sbjct: 982 TNS 984


>AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific
           transcription factor FRU-MB protein.
          Length = 759

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 78  GGCAGASGDNGTCMTAR--ECSTRGGSANGYCANGYGLCCIFMTSCGSTTSENG--TYFV 133
           GG  G  G  G+  +      S  GG  +G  ++G G+  +   + G+  +  G     +
Sbjct: 654 GGGGGGGGGGGSVGSGGIGSSSLGGGGGSGRSSSGGGMIGMHSVAAGAAVAAGGGVAGMM 713

Query: 134 SSAYPSSYDGTGSC 147
           S+    +  G G C
Sbjct: 714 STGAGVNRGGDGGC 727


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 23.0 bits (47), Expect = 6.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 26  HGTGMLNGVSLPKLNRSYK 44
           HGT  L+   LPKL+ SY+
Sbjct: 224 HGTDPLSRHRLPKLHYSYR 242


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.137    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 257,233
Number of Sequences: 2123
Number of extensions: 11897
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 4
length of query: 205
length of database: 516,269
effective HSP length: 61
effective length of query: 144
effective length of database: 386,766
effective search space: 55694304
effective search space used: 55694304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)