Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002132-TA|BGIBMGA002132-PA|IPR000859|CUB
(205 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77657-4|CAB01149.1| 347|Caenorhabditis elegans Hypothetical pr... 33 0.11
U58750-13|AAB00653.1| 616|Caenorhabditis elegans Hypothetical p... 30 1.0
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z11126-7|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 30 1.4
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 30 1.4
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 30 1.4
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 30 1.4
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 29 1.8
AF016445-8|AAC69052.1| 244|Caenorhabditis elegans Hypothetical ... 29 1.8
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 3.1
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 29 3.1
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 29 3.1
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z27078-2|CAA81588.3| 788|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z27078-1|CAA81587.2| 628|Caenorhabditis elegans Hypothetical pr... 28 4.1
U41107-2|AAK73880.1| 111|Caenorhabditis elegans Temporarily ass... 28 4.1
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 28 4.1
AF022979-10|AAB69905.3| 651|Caenorhabditis elegans Nematode ast... 28 4.1
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 28 5.4
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 28 5.4
U07628-1|AAA17738.1| 515|Caenorhabditis elegans APX-1 protein. 28 5.4
AF101319-2|AAC69353.4| 515|Caenorhabditis elegans Anterior phar... 28 5.4
AF016445-5|AAC69059.1| 250|Caenorhabditis elegans Hypothetical ... 28 5.4
Z82085-6|CAB04987.1| 259|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z68227-6|CAA92512.1| 410|Caenorhabditis elegans Hypothetical pr... 27 7.2
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr... 27 7.2
AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like ... 27 7.2
Z92788-1|CAB07213.1| 341|Caenorhabditis elegans Hypothetical pr... 27 9.5
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 27 9.5
U42830-2|AAC48274.1| 243|Caenorhabditis elegans Hypothetical pr... 27 9.5
AL023828-27|CAI46622.1| 308|Caenorhabditis elegans Hypothetical... 27 9.5
>Z77657-4|CAB01149.1| 347|Caenorhabditis elegans Hypothetical
protein F08H9.5 protein.
Length = 347
Score = 33.5 bits (73), Expect = 0.11
Identities = 25/95 (26%), Positives = 35/95 (36%), Gaps = 7/95 (7%)
Query: 81 AGASGDNGTCMTARECSTRGGSANGYCANGYGLCCIFMTSCGSTTSENGTY-----FVSS 135
+G G NG C T + G A + LC C S TS G Y S
Sbjct: 113 SGEPGVNGDCATFKGAGASGLKATQCYSIQPALCRQMPALCPSQTSYGGQYTGSGTITSP 172
Query: 136 AYPSSYDGTGSCELTVIKSHPDVCQIRLDFDRFTI 170
YP+ Y C T++ P+ I + F + +
Sbjct: 173 GYPNQYYNNLDCVYTILS--PNNTYITMQFSPYMV 205
>U58750-13|AAB00653.1| 616|Caenorhabditis elegans Hypothetical
protein F55G1.13 protein.
Length = 616
Score = 30.3 bits (65), Expect = 1.0
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Query: 76 PNGGCA-GASGDNGTCMTARECSTRGGSANGYCANGYGLCCIFMTSCGSTTSENGTYFVS 134
P CA G +G + T +T+ CS + NG C++ G SC T G
Sbjct: 82 PTCTCAVGYTGTDCTMLTSDPCSPQPCLQNGVCSSSGG-----TYSCACATGFFGEQCQY 136
Query: 135 SAYP-SSY-DGTGSCELTVIKSHPDVCQIRLDF 165
S P S Y G+CE+ + P CQ D+
Sbjct: 137 SGDPCSGYCSNGGTCEMLFSDTTP-YCQCPFDY 168
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.9 bits (64), Expect = 1.4
Identities = 24/71 (33%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 78 GGCAGASGDNGTCMTARECSTRGGSANGYCANGYGLCC--IFMTSCGSTTSENGTYFVSS 135
GGC G G G C GGS+ G C G G C CG +S G Y V+
Sbjct: 129 GGCGGGGG--GGCGGGSSGGCGGGSSGG-CGGGGGGGCGGGGGGGCGGGSSGGGGYAVAP 185
Query: 136 AYPSSYDGTGS 146
+ G GS
Sbjct: 186 SGGGGCGGGGS 196
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/53 (32%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 78 GGCAGASGDNGTCM-TARECSTRGGSANGYCANGYGLCCIFMTSCGSTTSENG 129
GGC G G G C C G G C G G C CG G
Sbjct: 36 GGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGG-CAPPPAPCGGGCGGGG 87
>Z11126-7|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.9 bits (64), Expect = 1.4
Identities = 24/71 (33%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 78 GGCAGASGDNGTCMTARECSTRGGSANGYCANGYGLCC--IFMTSCGSTTSENGTYFVSS 135
GGC G G G C GGS+ G C G G C CG +S G Y V+
Sbjct: 129 GGCGGGGG--GGCGGGSSGGCGGGSSGG-CGGGGGGGCGGGGGGGCGGGSSGGGGYAVAP 185
Query: 136 AYPSSYDGTGS 146
+ G GS
Sbjct: 186 SGGGGCGGGGS 196
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/53 (32%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 78 GGCAGASGDNGTCM-TARECSTRGGSANGYCANGYGLCCIFMTSCGSTTSENG 129
GGC G G G C C G G C G G C CG G
Sbjct: 36 GGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGG-CAPPPAPCGGGCGGGG 87
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/62 (32%), Positives = 29/62 (46%)
Query: 79 GCAGASGDNGTCMTARECSTRGGSANGYCANGYGLCCIFMTSCGSTTSENGTYFVSSAYP 138
G +SG GT MT+ S+ GS+ G + MTS GST + + S+A
Sbjct: 530 GATTSSGSAGTTMTSPSQSSSVGSSQGSTSPAASTTSGEMTSQGSTQTPGSSVSTSAAIL 589
Query: 139 SS 140
+S
Sbjct: 590 TS 591
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/62 (32%), Positives = 29/62 (46%)
Query: 79 GCAGASGDNGTCMTARECSTRGGSANGYCANGYGLCCIFMTSCGSTTSENGTYFVSSAYP 138
G +SG GT MT+ S+ GS+ G + MTS GST + + S+A
Sbjct: 737 GATTSSGSAGTTMTSPSQSSSVGSSQGSTSPAASTTSGEMTSQGSTQTPGSSVSTSAAIL 796
Query: 139 SS 140
+S
Sbjct: 797 TS 798
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/62 (32%), Positives = 29/62 (46%)
Query: 79 GCAGASGDNGTCMTARECSTRGGSANGYCANGYGLCCIFMTSCGSTTSENGTYFVSSAYP 138
G +SG GT MT+ S+ GS+ G + MTS GST + + S+A
Sbjct: 737 GATTSSGSAGTTMTSPSQSSSVGSSQGSTSPAASTTSGEMTSQGSTQTPGSSVSTSAAIL 796
Query: 139 SS 140
+S
Sbjct: 797 TS 798
Score = 27.5 bits (58), Expect = 7.2
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Query: 72 VVTFPNGGCAGASGDNGTCMTARECSTRGGSANGYCANGYGLCCIFMTSCGSTTSENGTY 131
VV+ + G G G+ +T + ST GSA+ G TS GS+TS N +
Sbjct: 1041 VVSTISQGSTETPGSTGSTVT--KPSTVSGSASSGSTATMGSTEASSTSGGSSTSPNPSQ 1098
Query: 132 FVSSAYPSSYDGTGSCELTVIKSHPDVCQ 160
S + + GS T+ P Q
Sbjct: 1099 STSPSTSGATSSPGSSGTTLTSISPSPSQ 1127
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 29.5 bits (63), Expect = 1.8
Identities = 32/84 (38%), Positives = 38/84 (45%), Gaps = 12/84 (14%)
Query: 58 PAAPKESRF-LSLFTVVTFPNGGCAGASGDNGTCMTARECSTRGGSANGYCANGYGLCCI 116
PAAP F S T T P GG G+S TA S GS A G GL
Sbjct: 135 PAAPTGGLFGSSTSTATTAPTGGLFGSS-------TAAPSSGLFGSTAAPAAPG-GL--- 183
Query: 117 FMTSCGSTTSENGTYFVSSAYPSS 140
F ++ ST + +G F SSA P+S
Sbjct: 184 FGSTSTSTAAPSGGLFGSSAAPTS 207
>AF016445-8|AAC69052.1| 244|Caenorhabditis elegans Hypothetical
protein T05B4.12 protein.
Length = 244
Score = 29.5 bits (63), Expect = 1.8
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 77 NGGCAGASGDNGTCMTARECSTRGGSA--NGYCANGYGLCCIFMTSCGSTTSENGTYFV- 133
+GGC A + G ++ C+T G N YC G C S GS TS T +
Sbjct: 151 SGGCVDAVTNCGNDLSI--CNTVGMQTFVNQYCQKTCGRCPSTTASSGSVTSGTCTSYAA 208
Query: 134 -SSAYPSSYDGTGSCELT 150
SS +S+ G C T
Sbjct: 209 DSSTSCTSWAKNGFCTNT 226
>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
protein E01G6.1 protein.
Length = 1391
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 63 ESRFLSLFTVVTFPNGGCAGASGDNGTCMTARECSTRGGSANGYCANGYGLCCIFMTSC 121
+S++L+ F + P+G G+ T + +CS NG+ N CC + ++C
Sbjct: 156 KSQYLNKFICCSNPDGEIMGSCPGGETPLENIQCSATKPCPNGFSCND-KKCCPYASAC 213
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 67 LSLFTVVTFPNGGCAGASGD-NGTCMTARECSTRGGSANGYCA 108
LS+ T FP+GG G G G C C GG G CA
Sbjct: 12 LSVATAFLFPSGGGGGGGGGCGGGCGGGGGCG-GGGGCGGGCA 53
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 84 SGDNGTCMTARECSTRGGSANGYCANGYG 112
SGD TC EC+ G + C N G
Sbjct: 149 SGDGNTCSDIDECAVSNGGCSDRCVNSPG 177
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 86 DNGTCMTARECSTRGGSANGYCANGYGLCCIFMTSC--GSTTSENG 129
D TC ECS+ G C+N G +M SC G SE+G
Sbjct: 412 DRKTCEDISECSSNNGGCEQICSNQEG---GYMCSCEPGFELSEDG 454
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 84 SGDNGTCMTARECSTRGGSANGYCANGYG 112
SGD TC EC+ G + C N G
Sbjct: 149 SGDGNTCSDIDECAVSNGGCSDRCVNSPG 177
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 86 DNGTCMTARECSTRGGSANGYCANGYGLCCIFMTSC--GSTTSENG 129
D TC ECS+ G C+N G +M SC G SE+G
Sbjct: 412 DRKTCEDISECSSNNGGCEQICSNQEG---GYMCSCEPGFELSEDG 454
>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
protein K04H4.2c protein.
Length = 1446
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 100 GGSANGYCANGYGLCCIFMTSCGSTTSENGTYFVSSAYPSSYDGTGSC 147
GG ++GYCA GY CI C S S + PS + G+C
Sbjct: 897 GGCSSGYCATGYS--CIQNQCCPSYNSAPRISVYTC--PSGGNAVGAC 940
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 100 GGSANGYCANGY----GLCCIFMTSCGSTTSENGTYFVSSAYPS-SYDGTGSCELT 150
GG NG C GY GLCC ++ + +G+ V + PS + DG G +++
Sbjct: 976 GGCVNGQCGTGYTCSNGLCCAGTST--TVKCLDGSDAVGACIPSCTGDGCGGVQVS 1029
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 87 NGTCMTARECSTRGGSANGYCANGYGLCCIFMTSCGSTTSENGTYFVSSAYPSSYDGT 144
+G T CS + G C NGY CC ++ GS ++ T S+ PS + T
Sbjct: 683 SGLVCTFSSCSNSNPCSVGTCNNGY--CCSSGSNSGSAIIDSDTN--STTNPSQPETT 736
>Z27078-2|CAA81588.3| 788|Caenorhabditis elegans Hypothetical
protein K04H4.2b protein.
Length = 788
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 100 GGSANGYCANGYGLCCIFMTSCGSTTSENGTYFVSSAYPSSYDGTGSC 147
GG ++GYCA GY CI C S S + PS + G+C
Sbjct: 239 GGCSSGYCATGYS--CIQNQCCPSYNSAPRISVYTC--PSGGNAVGAC 282
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 100 GGSANGYCANGY----GLCCIFMTSCGSTTSENGTYFVSSAYPS-SYDGTGSCELT 150
GG NG C GY GLCC ++ + +G+ V + PS + DG G +++
Sbjct: 318 GGCVNGQCGTGYTCSNGLCCAGTST--TVKCLDGSDAVGACIPSCTGDGCGGVQVS 371
>Z27078-1|CAA81587.2| 628|Caenorhabditis elegans Hypothetical
protein K04H4.2a protein.
Length = 628
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 100 GGSANGYCANGYGLCCIFMTSCGSTTSENGTYFVSSAYPSSYDGTGSC 147
GG ++GYCA GY CI C S S + PS + G+C
Sbjct: 239 GGCSSGYCATGYS--CIQNQCCPSYNSAPRISVYTC--PSGGNAVGAC 282
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 100 GGSANGYCANGY----GLCCIFMTSCGSTTSENGTYFVSSAYPS-SYDGTGSCELT 150
GG NG C GY GLCC ++ + +G+ V + PS + DG G +++
Sbjct: 318 GGCVNGQCGTGYTCSNGLCCAGTST--TVKCLDGSDAVGACIPSCTGDGCGGVQVS 371
>U41107-2|AAK73880.1| 111|Caenorhabditis elegans Temporarily
assigned gene nameprotein 234 protein.
Length = 111
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 95 ECSTRGGSANGYCANGYGLCCIFMTSCGS 123
+CS+ G S N NGYG CC C S
Sbjct: 70 QCSSSGCSTN---KNGYGTCCCTRDLCNS 95
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 14 ELATSQDAKEMVHGTGMLNGVSLPKLNRSYKKNYYDIKQE 53
E+ T Q KE+V TG+LN + ++N S K Y + E
Sbjct: 4507 EILTVQ--KELVKATGILNAAASREINASSKMEYSKVPSE 4544
>AF022979-10|AAB69905.3| 651|Caenorhabditis elegans Nematode
astacin protease protein32 protein.
Length = 651
Score = 28.3 bits (60), Expect = 4.1
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 80 CAGASGDNGTCMTARECSTRGGSANGYCANGYGLCCIFMTSCGSTTSENGTYFVSSAYP- 138
CA S D TC++ + +G S A +C M CG S++GT +P
Sbjct: 561 CADTS-DKATCLSLKSAKEQGCSIYD-TAQLKVMCAATMDLCGKVASDDGT--CKDRFPK 616
Query: 139 ---SSYDGTGSC 147
S+Y G C
Sbjct: 617 SQCSTYSTNGMC 628
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
protein F57F4.4 protein.
Length = 2090
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 84 SGDNGTCMTARECSTRGGSANGYCANGYGLCCIFMTSCGS 123
SGD TC C++ G NGY A Y C+ C S
Sbjct: 136 SGDTVTCSPGNVCTSVSGVYNGYDAAAY--ACMPQGLCDS 173
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 84 SGDNGTCMTARECSTRGGSANGYCANGY 111
SGD TC C++ G NGY A Y
Sbjct: 136 SGDTVTCSAGNVCTSVSGVYNGYDAAAY 163
>U07628-1|AAA17738.1| 515|Caenorhabditis elegans APX-1 protein.
Length = 515
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 80 CAGASGDNGTCMTARECSTRGGSANGYCAN 109
C+ A G NGT +C R G NG C N
Sbjct: 193 CSCADGFNGT--RCEQCLPRAGCVNGDCVN 220
>AF101319-2|AAC69353.4| 515|Caenorhabditis elegans Anterior pharynx
in excess protein1 protein.
Length = 515
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 80 CAGASGDNGTCMTARECSTRGGSANGYCAN 109
C+ A G NGT +C R G NG C N
Sbjct: 193 CSCADGFNGT--RCEQCLPRAGCVNGDCVN 220
>AF016445-5|AAC69059.1| 250|Caenorhabditis elegans Hypothetical
protein T05B4.9 protein.
Length = 250
Score = 27.9 bits (59), Expect = 5.4
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 78 GGCAGASGDNGTCMTARECSTRGGSANGYCANGYGLCCIFMTSCGSTTSENGT---YFV- 133
GGC A + GT ++ + N YC G C T+ GS T +GT Y
Sbjct: 157 GGCVDAVTNCGTDLSICQNIGMQSFVNTYCQRTCGR-CPSTTASGSVTVTSGTCTSYIAD 215
Query: 134 SSAYPSSYDGTGSCELT 150
SS+ +S+ G C T
Sbjct: 216 SSSNCASWSRNGFCTNT 232
>Z82085-6|CAB04987.1| 259|Caenorhabditis elegans Hypothetical
protein ZK218.7 protein.
Length = 259
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 83 ASGDNGTCMTARECSTRG---GSANGYCANGYGLCCIFMTSCGST 124
A+ +GTC T S R +ANG+C N + +SC +T
Sbjct: 211 ATASSGTCTTYNADSNRSCAAWAANGFCQNTFYSIAQRRSSCATT 255
>Z68227-6|CAA92512.1| 410|Caenorhabditis elegans Hypothetical
protein F49C12.8 protein.
Length = 410
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 20 DAKEMVHGTGMLNGVSLPKLNRSYKKNYYDIKQERRFWPAAPKES 64
+ +E + G G LNG +P R Y ++YYD +R F A ES
Sbjct: 259 EVQEQLTGGG-LNGTLIPV--REYLESYYDCHYDRFFIQLAALES 300
>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical
protein F30H5.3 protein.
Length = 1599
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 84 SGDNGTCMTAREC-STRGGSANGYCANGYGLC 114
S +N C T C S G+ GYC +G LC
Sbjct: 959 SSNNNQCPTGYTCQSDVPGAFQGYCCSGNHLC 990
>AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like
(grd related) protein29 protein.
Length = 172
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/35 (40%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 78 GGCAGASGDNGTCMTARECSTRGGSANGYCANGYG 112
GGC G G G C GG GY GYG
Sbjct: 29 GGCGGGGGCGGGGGCGGGCGYGGGGGCGY-GGGYG 62
>Z92788-1|CAB07213.1| 341|Caenorhabditis elegans Hypothetical
protein F53B8.1 protein.
Length = 341
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 78 GGCAGASGDNGTCMTARECSTRGGSA--NGYCANGYG 112
GG AGA G G E S+R G+A NG+ NG G
Sbjct: 205 GGGAGAGG-GGNSSYYEEYSSRNGAAGGNGHVGNGGG 240
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 27.1 bits (57), Expect = 9.5
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 78 GGCAGASGDNG--TCMTARECSTRGGSANGYCANGYGLCCIFMTSCGSTTSENGTYFVSS 135
GG AG SG G TC + + GGS G ++G+G TS + ++ + S
Sbjct: 66 GGKAGGSGFGGGNTCGSGFGGGSTGGSPYGGASSGFGGST--ATSGFGSGEKSSAFGGSG 123
Query: 136 AYPSSYDGTGS 146
+ S G GS
Sbjct: 124 GFGGSATGFGS 134
>U42830-2|AAC48274.1| 243|Caenorhabditis elegans Hypothetical
protein C53B7.3 protein.
Length = 243
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 89 TCMTARECSTRGGSANGYCANGYGLCCIFMTSCGSTTSENGTYFVSSAYPSSYDGTGS 146
+C ++ ECS+ +NG C + G + +T + N Y ++S Y + TGS
Sbjct: 31 SCSSSYECSSGQTCSNGQCMSSLGYNGGLYS---NTYNNNNQYDMNSQYGNQMGTTGS 85
>AL023828-27|CAI46622.1| 308|Caenorhabditis elegans Hypothetical
protein Y17G7B.23 protein.
Length = 308
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 77 NGGCAGASGDNGTCMTARECSTRGGSANGYCANGYGLC--CIFMTS 120
NG C+ ++ GTC C+ G NG C+ + +C C TS
Sbjct: 173 NGDCSAST--TGTCKGVY-CTKTAGKMNGKCSKVFEICAHCYCKTS 215
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.321 0.137 0.438
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,884,117
Number of Sequences: 27539
Number of extensions: 272551
Number of successful extensions: 694
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 641
Number of HSP's gapped (non-prelim): 79
length of query: 205
length of database: 12,573,161
effective HSP length: 78
effective length of query: 127
effective length of database: 10,425,119
effective search space: 1323990113
effective search space used: 1323990113
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)
- SilkBase 1999-2023 -