GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002132-TA|BGIBMGA002132-PA|IPR000859|CUB
         (205 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    26   0.29 
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    21   6.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   6.3  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 15/61 (24%), Positives = 22/61 (36%)

Query: 114 CCIFMTSCGSTTSENGTYFVSSAYPSSYDGTGSCELTVIKSHPDVCQIRLDFDRFTIAGP 173
           C +   +  S  S N T      YPS Y   G   L        +C +   +  + IAG 
Sbjct: 614 CVVVEETIPSLNSTNVTLSTKCPYPSYYSYIGVLTLVATSMPTYICYLGKAYLMYAIAGS 673

Query: 174 E 174
           +
Sbjct: 674 Q 674


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
          protein.
          Length = 129

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 29 GMLNGVSLPKLNRSYKKNYYD 49
          G   G S P L+  YK+  YD
Sbjct: 46 GTKEGKSRPSLDIDYKQRVYD 66


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/32 (28%), Positives = 21/32 (65%), Gaps = 2/32 (6%)

Query: 24  MVHGTGMLNGVSLPKLNRSYKKNYYDIKQERR 55
           +V G G++ G+ L  +  +YKK  + I+++++
Sbjct: 828 IVVGVGIIGGIGLIIIEVAYKK--HQIRKQKK 857


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,715
Number of Sequences: 429
Number of extensions: 3210
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 205
length of database: 140,377
effective HSP length: 55
effective length of query: 150
effective length of database: 116,782
effective search space: 17517300
effective search space used: 17517300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)