GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002132-TA|BGIBMGA002132-PA|IPR000859|CUB
         (205 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g22660.1 68415.m02685 glycine-rich protein                          30   1.3  
At1g22470.1 68414.m02808 expressed protein                             29   1.7  
At2g01660.2 68415.m00093 33 kDa secretory protein-related contai...    28   5.1  
At2g01660.1 68415.m00092 33 kDa secretory protein-related contai...    28   5.1  
At5g24360.1 68418.m02872 protein kinase family protein / Ire1 ho...    27   6.8  
At2g27670.1 68415.m03353 hypothetical protein contains Pfam prof...    27   6.8  
At3g62310.1 68416.m07000 RNA helicase, putative similar to SP|P5...    27   9.0  
At1g68560.1 68414.m07833 alpha-xylosidase (XYL1) identical to al...    27   9.0  

>At2g22660.1 68415.m02685 glycine-rich protein 
          Length = 819

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 3/32 (9%)

Query: 78  GGCAGASGDNGTCMTARECSTRGGSANGYCAN 109
           GGC G  GD    + A  C   GG  NG C N
Sbjct: 786 GGCGGGCGDMVKSVNASGC---GGGCNGECGN 814


>At1g22470.1 68414.m02808 expressed protein
          Length = 146

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 118 MTSCGSTTSENGTYFVSSAYPSSYDGTGSC 147
           M+SC S +SE+ + F S+A  S Y    SC
Sbjct: 85  MSSCSSASSESESDFSSTAISSYYSSVSSC 114


>At2g01660.2 68415.m00093 33 kDa secretory protein-related contains
           Pfam PF01657: Domain of unknown function, duplicated in
           33 KDa secretory proteins
          Length = 259

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 7/63 (11%)

Query: 53  ERRFWPAAPKESRFLSLFT-------VVTFPNGGCAGASGDNGTCMTARECSTRGGSANG 105
           + +++P +P ES   SL T       + T+ N    G SGD+ +     +C     S +G
Sbjct: 34  QEKYFPGSPYESNVNSLLTSFVSSASLYTYNNFTTNGISGDSSSVYGLYQCRGDLSSGSG 93

Query: 106 YCA 108
            CA
Sbjct: 94  DCA 96


>At2g01660.1 68415.m00092 33 kDa secretory protein-related contains
           Pfam PF01657: Domain of unknown function, duplicated in
           33 KDa secretory proteins
          Length = 288

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 7/63 (11%)

Query: 53  ERRFWPAAPKESRFLSLFT-------VVTFPNGGCAGASGDNGTCMTARECSTRGGSANG 105
           + +++P +P ES   SL T       + T+ N    G SGD+ +     +C     S +G
Sbjct: 34  QEKYFPGSPYESNVNSLLTSFVSSASLYTYNNFTTNGISGDSSSVYGLYQCRGDLSSGSG 93

Query: 106 YCA 108
            CA
Sbjct: 94  DCA 96


>At5g24360.1 68418.m02872 protein kinase family protein / Ire1
           homolog-1 (IRE1-1) identical to Ire1 homolog-1
           [Arabidopsis thaliana] GI:15277137; cDNA Ire1 homolog-1
           GI:15277136;
          Length = 881

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 4/84 (4%)

Query: 77  NGGCAGASGDNGTCMTARECSTRGGSANGYCANGYGLCCIFMTSCGSTTSENGTYFVSSA 136
           NG  +G + D       +   T     N   A GY +  +F+++       NGT  +   
Sbjct: 419 NGFISGGNKDPSHEENEKRLLTAFPGLNNSSAEGYRVGKLFVSNKEIAKGSNGTVVLE-- 476

Query: 137 YPSSYDGTGSCELTVIKSHPDVCQ 160
              SY+G       +++SH DV Q
Sbjct: 477 --GSYEGRLVAVKRLVQSHHDVAQ 498


>At2g27670.1 68415.m03353 hypothetical protein contains Pfam
          profile PF02713: Domain of unknown function DUF220
          Length = 293

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 37 PKLNRSYKKNYYDIKQERRFW 57
          PKL   YKKN+  + ++ R W
Sbjct: 55 PKLKAEYKKNHSHVNRQARLW 75


>At3g62310.1 68416.m07000 RNA helicase, putative similar to
          SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
          (Helicase JA1) {Saccharomyces cerevisiae}; contains
          Pfam profiles PF04408: Helicase associated domain
          (HA2), PF00271: Helicase conserved C-terminal domain
          Length = 726

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 16 ATSQDAKEMVHGTGMLNGVSLPKLNRSYKKNYYDIKQERRFWPAAPKESRFL 67
          A +++AK      G +N +      + Y + YYDI ++RR  P   ++  FL
Sbjct: 20 APAKNAKTSGLPDGGINSLINKWNGKPYSQRYYDILEKRRTLPVWLQKEEFL 71


>At1g68560.1 68414.m07833 alpha-xylosidase (XYL1) identical to
           alpha-xylosidase precursor GB:AAD05539 GI:4163997 from
           [Arabidopsis thaliana]; contains Pfam profile PF01055:
           Glycosyl hydrolases family 31; identical to cDNA
           alpha-xylosidase precursor (XYL1) partial cds GI:4163996
          Length = 915

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)

Query: 165 FDRFTIAGPEPINHVCNQDQFIVSGGNPVP 194
           FD + IAGP P+N V   DQ+    G P P
Sbjct: 261 FDFYFIAGPSPLNVV---DQYTQLIGRPAP 287


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.137    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,567,004
Number of Sequences: 28952
Number of extensions: 250091
Number of successful extensions: 485
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 480
Number of HSP's gapped (non-prelim): 10
length of query: 205
length of database: 12,070,560
effective HSP length: 78
effective length of query: 127
effective length of database: 9,812,304
effective search space: 1246162608
effective search space used: 1246162608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)