GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002131-TA|BGIBMGA002131-PA|IPR002110|Ankyrin,
IPR005821|Ion transport
         (1171 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    25   2.7  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    24   8.3  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
            protein.
          Length = 405

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 1048 KLELIEYPNNKKCKLGFLDLILHKWFCNPFTEDTGLDLVLENNDDYVTEQMEKQKRKFRE 1107
            K  L+E+  NK C  G   L + K F N +  +  + L +E+  + +T  +    R F E
Sbjct: 83   KCSLVEFSENKNCNAG--SLTVKKNFANKYCGN--ITLNIESTSNKMTVILTPPGRFFCE 138

Query: 1108 MQNV 1111
            ++ +
Sbjct: 139  VRPI 142


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 856 FPTLYGHYSNYQFSAASITVFLSWF 880
           F    GH+    F+ +++ V LSWF
Sbjct: 195 FERQIGHHLIQTFAPSTLVVMLSWF 219


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 334,847
Number of Sequences: 429
Number of extensions: 14786
Number of successful extensions: 36
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 3
length of query: 1171
length of database: 140,377
effective HSP length: 65
effective length of query: 1106
effective length of database: 112,492
effective search space: 124416152
effective search space used: 124416152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 49 (23.8 bits)