Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002130-TA|BGIBMGA002130-PA|undefined
(68 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0879 + 6896587-6896701,6896819-6897005,6897475-6897774,689... 28 1.1
10_08_0015 + 14116129-14116691,14116810-14117128,14117588-141186... 27 1.4
10_06_0110 + 10889414-10889669,10889756-10889806,10890595-108911... 27 1.4
07_03_1153 + 24398122-24398747,24399326-24399542,24399741-244002... 27 1.4
08_02_0717 + 20372728-20372836,20372936-20373078,20374131-203742... 25 5.7
09_04_0606 + 18909065-18909218,18909674-18909737,18910895-189110... 25 7.5
06_01_0302 + 2188905-2188989,2189309-2189406,2189487-2189753,218... 25 7.5
04_01_0364 - 4771649-4771975 25 7.5
03_01_0441 + 3418622-3420988 25 10.0
>01_01_0879 +
6896587-6896701,6896819-6897005,6897475-6897774,
6897877-6898133,6898596-6898825,6899122-6899247,
6900195-6900374,6901079-6901216,6901515-6901670,
6902409-6902699,6902923-6903162
Length = 739
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 10 PNVETIMWFRKLRASRPVPQRPELGPAIIVDGAIAHVEDSIIVAKSNSRK 59
P ++ R L +SR +P P LG A V +A + + K +RK
Sbjct: 15 PAAAALLHHRPLPSSRSLPPLPSLGSAGFVYSTVADESTAPVKPKGKARK 64
>10_08_0015 +
14116129-14116691,14116810-14117128,14117588-14118664,
14118754-14119056
Length = 753
Score = 27.5 bits (58), Expect = 1.4
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 3 SEAGEYDPNVETIMWFRKLRASRPVPQRPELGPAIIVDGAIAHVEDSIIVAKSNSRKRGF 62
+E GEY+ V ++W+ L A V + + G +++D A+ V+ I K R+ GF
Sbjct: 359 NELGEYEFLVAIVIWYEVLYAVNLVSKSLQ-GKDMLIDVAVEKVQGLISFFK-GYRETGF 416
Query: 63 I 63
+
Sbjct: 417 L 417
>10_06_0110 +
10889414-10889669,10889756-10889806,10890595-10891163,
10891178-10891660,10891747-10891944,10893300-10893354,
10893372-10893631
Length = 623
Score = 27.5 bits (58), Expect = 1.4
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
Query: 3 SEAGEYDPNVETIMWFR-----KLRASRPVPQRPELGPAIIVDG 41
S E D N+ TI++++ +L AS PV ++PEL PA++ G
Sbjct: 83 SNPDEEDLNINTIIFYQVRCTLQLSAS-PVDEKPELLPAVLDGG 125
>07_03_1153 +
24398122-24398747,24399326-24399542,24399741-24400220,
24400801-24401007,24401112-24401249,24401317-24401538
Length = 629
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 21 LRASRPVPQRPELGPAIIVDGAIA 44
+ +SRP+ Q+PEL PA D A A
Sbjct: 26 ISSSRPLLQQPELSPAAAADAAPA 49
>08_02_0717 +
20372728-20372836,20372936-20373078,20374131-20374211,
20374307-20374510,20374789-20374796,20375153-20375245,
20375377-20375500,20375585-20375650,20375841-20375907,
20376600-20376676,20377032-20377145,20377546-20377623,
20377705-20377856,20377960-20378020,20378292-20378398,
20378497-20378562,20379099-20379177,20379671-20379967
Length = 641
Score = 25.4 bits (53), Expect = 5.7
Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 15 IMWFRKLRASRPVPQRPELGPAIIVDGAIAHVEDSIIVAKS 55
+ W + ++ S P+ + LGP ++ +G ++ + AKS
Sbjct: 336 VAWAKNIKVSDPLEEGCRLGP-VVSEGQYEKIKQFVSTAKS 375
>09_04_0606 +
18909065-18909218,18909674-18909737,18910895-18911023,
18913680-18913830,18914369-18914491,18915638-18915711,
18916048-18916591,18916948-18917085,18917159-18917203
Length = 473
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 35 PAIIVDGAIAHVEDSIIVAKSNSRKRGF 62
PA+ +D A+A+ + V S+ R+RGF
Sbjct: 14 PAVCLDAAMAYEFYKLSVMASDLRRRGF 41
>06_01_0302 +
2188905-2188989,2189309-2189406,2189487-2189753,
2189906-2189947,2190071-2190078,2190230-2190273,
2190615-2190695,2190779-2190907,2191017-2191114,
2191188-2191448,2191537-2191581,2191748-2191881,
2191965-2192045,2192127-2192308,2192632-2192746,
2192873-2193056,2193144-2193329
Length = 679
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 32 ELGPAIIVDGAIAHVEDSIIVAKSNS 57
E GP + VDG + H ++ I KSNS
Sbjct: 153 EGGPLLSVDGDMVHRPEASIGEKSNS 178
>04_01_0364 - 4771649-4771975
Length = 108
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 22 RASRPVPQRPELGPAIIVDGAIA 44
+A RP P PELGP GA A
Sbjct: 43 QARRPYPAAPELGPIECSVGAAA 65
>03_01_0441 + 3418622-3420988
Length = 788
Score = 24.6 bits (51), Expect = 10.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 38 IVDGAIAHVEDSIIVAKSNSRKRGFIVS 65
+V GA++H+ DSI+ N + F V+
Sbjct: 645 MVSGAMSHISDSIMTTLLNEGVKRFTVN 672
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.135 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,041,239
Number of Sequences: 37544
Number of extensions: 69647
Number of successful extensions: 142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 136
Number of HSP's gapped (non-prelim): 9
length of query: 68
length of database: 14,793,348
effective HSP length: 48
effective length of query: 20
effective length of database: 12,991,236
effective search space: 259824720
effective search space used: 259824720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)
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