GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002130-TA|BGIBMGA002130-PA|undefined
         (68 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3KIC7 Cluster: Putative helicase; n=1; Streptomyces am...    31   4.6  
UniRef50_A5P852 Cluster: GGDEF family protein; n=1; Erythrobacte...    31   6.1  
UniRef50_Q7U4C5 Cluster: Ribonuclease E; n=12; Cyanobacteria|Rep...    30   8.1  
UniRef50_Q1YQQ7 Cluster: Putative uncharacterized protein; n=1; ...    30   8.1  
UniRef50_A6VE24 Cluster: Membrane protein, putative; n=9; Pseudo...    30   8.1  
UniRef50_Q21127 Cluster: Putative uncharacterized protein; n=1; ...    30   8.1  

>UniRef50_A3KIC7 Cluster: Putative helicase; n=1; Streptomyces
           ambofaciens ATCC 23877|Rep: Putative helicase -
           Streptomyces ambofaciens ATCC 23877
          Length = 843

 Score = 31.1 bits (67), Expect = 4.6
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 7   EYDPNVETIMWFRKLRASRPVPQRPELGPA-IIVDGAI 43
           E+ P  E  +  R L   RP P  P LGPA + +DGA+
Sbjct: 260 EFRPAAEAGLGSRVLDVGRPWPAEPSLGPATLAMDGAL 297


>UniRef50_A5P852 Cluster: GGDEF family protein; n=1; Erythrobacter
           sp. SD-21|Rep: GGDEF family protein - Erythrobacter sp.
           SD-21
          Length = 458

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 8/65 (12%)

Query: 7   EYDPNVETIMWFRKLRASRPVPQRPELGPAIIVD------GAIAHVEDSIIVAKSNSRKR 60
           + DP +    WF + R S PVP R E  P  +VD        IA + D+ +V +  +RK 
Sbjct: 103 DVDPQMAVRAWFARTRFSVPVP-RSE-SPLEVVDVVFERPRTIATIRDTRLVTREEARKE 160

Query: 61  GFIVS 65
            F  S
Sbjct: 161 HFFRS 165


>UniRef50_Q7U4C5 Cluster: Ribonuclease E; n=12; Cyanobacteria|Rep:
           Ribonuclease E - Synechococcus sp. (strain WH8102)
          Length = 663

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 27  VPQRPELGPAIIVDGAIAHVEDSIIVAKSNSRKRGFIVSTP 67
           VP  PE  PA++VDG+ A  ED+        R+R    ++P
Sbjct: 622 VPPLPEPTPAVVVDGSEATAEDTESEEPRRRRRRSSASASP 662


>UniRef50_Q1YQQ7 Cluster: Putative uncharacterized protein; n=1;
          gamma proteobacterium HTCC2207|Rep: Putative
          uncharacterized protein - gamma proteobacterium
          HTCC2207
          Length = 168

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 22 RASRPVPQRPELGPAIIVDGAIAHVEDSIIVAKSNSRKRG 61
          RAS  +  +  +GP +I+DG I   ED II  K +    G
Sbjct: 28 RASVSIGGKTMIGPTVIIDGNIISAEDLIIEGKVSGTVTG 67


>UniRef50_A6VE24 Cluster: Membrane protein, putative; n=9;
           Pseudomonas|Rep: Membrane protein, putative -
           Pseudomonas aeruginosa PA7
          Length = 652

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 2   PSEAGEYDPNVETIMWFRKLRASRPVPQRPELGPAIIVDGAIAHVEDSIIVAKSNSRKRG 61
           P+E  E+D        FR LRA  P+ QR   GP  ++D   A ++ S  V +   R + 
Sbjct: 258 PAEIAEHDGEAAGES-FRALRAHPPLEQR---GPGQLIDYTAATLDKSFAVYREGDRDQA 313

Query: 62  FIVS 65
           + +S
Sbjct: 314 YDLS 317


>UniRef50_Q21127 Cluster: Putative uncharacterized protein; n=1;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 819

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)

Query: 23  ASRPVPQRPELGPAIIVDGAIAHVEDSIIVAKSNS 57
           +SRP PQ P L  + ++   IA VE S     SNS
Sbjct: 588 SSRPAPQLPSLQESFLMAHGIAQVETSSTAGPSNS 622


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.135    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,104,471
Number of Sequences: 1657284
Number of extensions: 2457527
Number of successful extensions: 4920
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4915
Number of HSP's gapped (non-prelim): 8
length of query: 68
length of database: 575,637,011
effective HSP length: 47
effective length of query: 21
effective length of database: 497,744,663
effective search space: 10452637923
effective search space used: 10452637923
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 65 (30.3 bits)