GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002130-TA|BGIBMGA002130-PA|undefined
         (68 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    26   0.53 
SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   1.2  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    23   5.0  

>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 26.2 bits (55), Expect = 0.53
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 4   EAGEYDPNVETIMWFRKLRASRPVPQRPELGPAIIVDGAIAHVEDSIIV 52
           EAG+ D   E   +    RAS  +P+  ++ PA+ +DG + +V D +++
Sbjct: 316 EAGKLDS--EFFNYETDSRASPQLPKN-DIQPAVSIDGTLLNVGDWVLI 361


>SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 158

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 3  SEAGEYDPNVETIMWFRKLRASRPVPQRPE 32
          S  G Y+P    ++  R+ R   P P+RPE
Sbjct: 50 SHCGWYEPVDSAMIDQRRRREDLPTPERPE 79


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
          Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 18 FRKLRASRPVPQRPELGPAIIVDGAIAHVEDSIIVAKSNSRK 59
          FR LR +RP P  P +G   + + + +  E        N+++
Sbjct: 8  FRNLRLARPRPFLPLVGKRFVTEKSQSQEEKDTSKITENAKE 49


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.135    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 302,735
Number of Sequences: 5004
Number of extensions: 9283
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 3
length of query: 68
length of database: 2,362,478
effective HSP length: 48
effective length of query: 20
effective length of database: 2,122,286
effective search space: 42445720
effective search space used: 42445720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)