GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002130-TA|BGIBMGA002130-PA|undefined
         (68 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6580| Best HMM Match : SAC3_GANP (HMM E-Value=2.1)                  27   1.6  
SB_7551| Best HMM Match : zf-HIT (HMM E-Value=8.4)                     25   6.5  

>SB_6580| Best HMM Match : SAC3_GANP (HMM E-Value=2.1)
          Length = 1187

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/38 (28%), Positives = 23/38 (60%)

Query: 18  FRKLRASRPVPQRPELGPAIIVDGAIAHVEDSIIVAKS 55
           F +++   P+P+R  L    I+ G +A   +SI+++K+
Sbjct: 65  FGEIQMELPLPKRLPLSQVAILQGCLATAGESIVLSKT 102


>SB_7551| Best HMM Match : zf-HIT (HMM E-Value=8.4)
          Length = 243

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 12  VETIMWFRKLRASRPVPQRPELGPAIIVDGAIAHVE--DSIIVAKSNSRK 59
           V+++ W+R+L   +P  +R        VDG  +H E  D  I ++ ++ K
Sbjct: 76  VKSVWWWRRLEKCKPKKKRKRKHKHTKVDGQDSHGETTDDQIASEDSALK 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.135    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,248,402
Number of Sequences: 59808
Number of extensions: 72692
Number of successful extensions: 105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103
Number of HSP's gapped (non-prelim): 2
length of query: 68
length of database: 16,821,457
effective HSP length: 47
effective length of query: 21
effective length of database: 14,010,481
effective search space: 294220101
effective search space used: 294220101
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)