GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002130-TA|BGIBMGA002130-PA|undefined
         (68 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC014486-1|AAH14486.2|  438|Homo sapiens CLIP3 protein protein.        27   9.5  
BC013116-1|AAH13116.2|  547|Homo sapiens CAP-GLY domain containi...    27   9.5  
AL117468-1|CAB55943.1|  161|Homo sapiens hypothetical protein pr...    27   9.5  
AJ427922-1|CAD20873.1|  547|Homo sapiens CLIP-170-related protei...    27   9.5  

>BC014486-1|AAH14486.2|  438|Homo sapiens CLIP3 protein protein.
          Length = 438

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 19  RKLRASRPVPQRPELGPAIIVDGAIAHVEDSIIVAKSNSRKRGFI 63
           R+ +  +  P  P LG     DGA A V D ++VA    +K+G +
Sbjct: 282 REHKGKKKTPSSPSLGSLQQRDGAKAEVGDQVLVA---GQKQGIV 323


>BC013116-1|AAH13116.2|  547|Homo sapiens CAP-GLY domain containing
           linker protein 3 protein.
          Length = 547

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 19  RKLRASRPVPQRPELGPAIIVDGAIAHVEDSIIVAKSNSRKRGFI 63
           R+ +  +  P  P LG     DGA A V D ++VA    +K+G +
Sbjct: 391 REHKGKKKTPSSPSLGSLQQRDGAKAEVGDQVLVA---GQKQGIV 432


>AL117468-1|CAB55943.1|  161|Homo sapiens hypothetical protein
          protein.
          Length = 161

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 19 RKLRASRPVPQRPELGPAIIVDGAIAHVEDSIIVAKSNSRKRGFI 63
          R+ +  +  P  P LG     DGA A V D ++VA    +K+G +
Sbjct: 5  REHKGKKKTPSSPSLGSLQQRDGAKAEVGDQVLVA---GQKQGIV 46


>AJ427922-1|CAD20873.1|  547|Homo sapiens CLIP-170-related protein
           protein.
          Length = 547

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 19  RKLRASRPVPQRPELGPAIIVDGAIAHVEDSIIVAKSNSRKRGFI 63
           R+ +  +  P  P LG     DGA A V D ++VA    +K+G +
Sbjct: 391 REHKGKKKTPSSPSLGSLQQRDGAKAEVGDQVLVA---GQKQGIV 432


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.318    0.135    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,021,120
Number of Sequences: 224733
Number of extensions: 330899
Number of successful extensions: 465
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 465
Number of HSP's gapped (non-prelim): 4
length of query: 68
length of database: 73,234,838
effective HSP length: 47
effective length of query: 21
effective length of database: 62,672,387
effective search space: 1316120127
effective search space used: 1316120127
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)