GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002130-TA|BGIBMGA002130-PA|undefined
         (68 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69663-2|CAA93509.2|  819|Caenorhabditis elegans Hypothetical pr...    30   0.17 
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    27   1.2  

>Z69663-2|CAA93509.2|  819|Caenorhabditis elegans Hypothetical
           protein K02B9.2 protein.
          Length = 819

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 15/35 (42%), Positives = 19/35 (54%)

Query: 23  ASRPVPQRPELGPAIIVDGAIAHVEDSIIVAKSNS 57
           +SRP PQ P L  + ++   IA VE S     SNS
Sbjct: 588 SSRPAPQLPSLQESFLMAHGIAQVETSSTAGPSNS 622



 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 23  ASRPVPQRPELGPAIIVDGAIAHVEDSIIVAKSNS 57
           +SRP PQ P L  + ++   ++ ++ S     SNS
Sbjct: 537 SSRPAPQLPNLPESFLMAHGLSQIQTSSTAGPSNS 571


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 32   ELGPAIIVDGAIAHVEDSIIVAKSNSRKRGFIVST 66
            EL  A +++ AIAH+E+  +V   + + R F+ S+
Sbjct: 8336 ELSRATMLNDAIAHLENQKVVVARSEKDRKFVESS 8370


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.135    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,644,512
Number of Sequences: 27539
Number of extensions: 53617
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73
Number of HSP's gapped (non-prelim): 4
length of query: 68
length of database: 12,573,161
effective HSP length: 48
effective length of query: 20
effective length of database: 11,251,289
effective search space: 225025780
effective search space used: 225025780
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)