GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002130-TA|BGIBMGA002130-PA|undefined
         (68 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   0.33 
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   1.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   3.0  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    19   4.0  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 0.33
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 25   RPVPQRPELGPAI 37
            RPVP+RPE  P +
Sbjct: 1363 RPVPERPERVPTV 1375


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 35 PAIIVDGAIAHVEDSIIVAKSNSRKRGFIVSTP 67
          P +I +G +  V   +++A  N+   GF+ STP
Sbjct: 4  PLVITEGMMIGV--LLMLAPINALLLGFVQSTP 34


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.8 bits (39), Expect = 3.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 37  IIVDGAIAHVEDSIIVAKS 55
           I  +   AH++DS+IV  S
Sbjct: 282 INAENETAHIKDSLIVLTS 300


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic
          acetylcholine receptor alpha9subunit protein.
          Length = 431

 Score = 19.4 bits (38), Expect = 4.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)

Query: 7  EYDPNVETI 15
          EYDPNV  I
Sbjct: 54 EYDPNVRPI 62


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,257
Number of Sequences: 429
Number of extensions: 741
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 68
length of database: 140,377
effective HSP length: 45
effective length of query: 23
effective length of database: 121,072
effective search space:  2784656
effective search space used:  2784656
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
S2: 35 (18.2 bits)