GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002130-TA|BGIBMGA002130-PA|undefined
         (68 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30160.1 68415.m03670 mitochondrial substrate carrier family ...    26   2.7  
At5g64960.1 68418.m08171 cyclin-dependent kinase, putative / CDK...    25   8.2  
At2g18360.1 68415.m02139 hydrolase, alpha/beta fold family prote...    25   8.2  
At1g04430.1 68414.m00434 dehydration-responsive protein-related ...    25   8.2  

>At2g30160.1 68415.m03670 mitochondrial substrate carrier family
          protein contains Pfam profile: PF00153 mitochondrial
          carrier protein
          Length = 331

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)

Query: 25 RPVPQRPELGPAIIV 39
          RP+PQ P+  PAIIV
Sbjct: 15 RPIPQPPDFHPAIIV 29


>At5g64960.1 68418.m08171 cyclin-dependent kinase, putative / CDK,
           putative similar to cyclin dependent kinase C
           [Lycopersicon esculentum] gi|15215944|emb|CAC51391
          Length = 513

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 7/21 (33%), Positives = 15/21 (71%)

Query: 10  PNVETIMWFRKLRASRPVPQR 30
           P V  + W+ ++++SRP+ +R
Sbjct: 266 PGVSKMPWYNQMKSSRPLKRR 286


>At2g18360.1 68415.m02139 hydrolase, alpha/beta fold family protein
           low similarity to SP|P24640|LIP3_MORSP Lipase 3
           precursor (EC 3.1.1.3) (Triacylglycerol lipase)
           {Moraxella sp}; contains Pfam profile PF00561:
           hydrolase, alpha/beta fold family
          Length = 313

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 31  PELGPAIIVDGAIAHVEDSIIVAKSNSRKRGFIVSTPL 68
           PE+  A++V G+I  + D+I  ++SN  + GF  S  L
Sbjct: 151 PEMVQAMVVSGSILAMTDTI--SESNLNQLGFKSSADL 186


>At1g04430.1 68414.m00434 dehydration-responsive protein-related
          similar to early-responsive to dehydration stress ERD3
          protein [Arabidopsis thaliana] GI:15320410; contains
          Pfam profile PF03141: Putative methyltransferase
          Length = 623

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 9/16 (56%), Positives = 14/16 (87%)

Query: 40 DGAIAHVEDSIIVAKS 55
          D ++A+ EDS++VAKS
Sbjct: 68 DDSVANAEDSLVVAKS 83


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.135    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,589,136
Number of Sequences: 28952
Number of extensions: 51259
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 102
Number of HSP's gapped (non-prelim): 4
length of query: 68
length of database: 12,070,560
effective HSP length: 48
effective length of query: 20
effective length of database: 10,680,864
effective search space: 213617280
effective search space used: 213617280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)