GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002129-TA|BGIBMGA002129-PA|undefined
         (328 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   4.1  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   4.1  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    22   5.4  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   9.4  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 5/25 (20%), Positives = 15/25 (60%)

Query: 272 DIYPMENGVYIPPPVNIEPQKVEDY 296
           +++P  N   + PP +++ +  ++Y
Sbjct: 453 EVFPNTNNAIMTPPASVQTESSDNY 477


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 5/25 (20%), Positives = 15/25 (60%)

Query: 272 DIYPMENGVYIPPPVNIEPQKVEDY 296
           +++P  N   + PP +++ +  ++Y
Sbjct: 401 EVFPNTNNAIMTPPASVQTESSDNY 425


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/22 (36%), Positives = 15/22 (68%), Gaps = 2/22 (9%)

Query: 254 LFNPEKLGFEQGKIQMWVDIYP 275
           +F  EK+   +GK+Q W++ +P
Sbjct: 159 IFYEEKI--VKGKLQCWIEFHP 178


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
          transcription factor protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/16 (43%), Positives = 8/16 (50%)

Query: 56 RQGYEYAPNLEWFKIH 71
          + G  Y     WFKIH
Sbjct: 73 KSGSRYGRRSNWFKIH 88


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.139    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,990
Number of Sequences: 317
Number of extensions: 4107
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 328
length of database: 114,650
effective HSP length: 57
effective length of query: 271
effective length of database: 96,581
effective search space: 26173451
effective search space used: 26173451
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)