GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002129-TA|BGIBMGA002129-PA|undefined
         (328 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.10 |mug57||meiotically upregulated gene Mug57|Schizosacc...    28   1.6  
SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|...    28   2.1  
SPAP8A3.10 |||mitochondrial intermembrane space protein sorting ...    27   4.8  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    27   4.8  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    26   6.4  

>SPBC146.10 |mug57||meiotically upregulated gene
           Mug57|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 243 HLVPEHVETRSLFNPEKLGFEQGKIQMWVDIYPMENGVYIPPP--VNIEPQKVEDYALKA 300
           HL  +  +  ++  P    F+Q K++ W   Y  +NGV +     V+I  Q+ +D  LK 
Sbjct: 65  HLFQQKDQHITVLVPNDAAFQQCKVKPWAIEY--KNGVAVKSTDIVHITEQQAQDNILKF 122

Query: 301 IIRQV 305
           + R +
Sbjct: 123 VERHI 127


>SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 117 EFSKFKDWCSTFKLYNGNKTGIPEK-DDQIFCGYL-KAGIAIYKWPPPENTKSVSTGGV 173
           ++  F  W    K  N  K G      D  +C Y  K G++  +WP  +    VS GG+
Sbjct: 80  DYLGFGGWSGVQK--NDGKYGTASTCQDNTYCSYACKPGMSKTQWPSEQPDNGVSVGGL 136


>SPAP8A3.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/75 (22%), Positives = 33/75 (44%)

Query: 235 HTLPIIGHHLVPEHVETRSLFNPEKLGFEQGKIQMWVDIYPMENGVYIPPPVNIEPQKVE 294
           ++L ++   ++  +V+       E+L  +QG++  W       N  YI     I+P K E
Sbjct: 30  YSLHVVSADVLERYVDDEGRLYTERLLVKQGRLPRWASDLLNVNKSYILERSVIDPSKQE 89

Query: 295 DYALKAIIRQVKLFR 309
             +    +  VK+ R
Sbjct: 90  LKSETFNLDHVKILR 104


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 94  YTEDSTRFFSEIKVYDAELEKQPEFSKFKDWCSTFKL--YNGNKTGIPEKDDQIFCGYLK 151
           Y  DS   +SE    +  +  +PE SK KD  +  ++  Y G    +P K++ +F  ++ 
Sbjct: 4   YVRDSESVYSESYPPENFISNEPEKSKDKDNFNGEEVISYVGEVETVPAKEENVFRRFIN 63

Query: 152 AGIAIYK 158
            G  I K
Sbjct: 64  -GFKIEK 69


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 248 HVETRSL-FNPEKLGFEQGKIQMWVDIYPMENGVYIPPPVNIEPQKVEDY 296
           H E  +L F+  +L  EQ KIQ W+     EN        N++P  ++D+
Sbjct: 262 HYEQGNLGFHQRQLAREQAKIQQWIAKRKAENANRAAE--NLQPLPLDDW 309


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.139    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,697,543
Number of Sequences: 5004
Number of extensions: 77302
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 138
Number of HSP's gapped (non-prelim): 5
length of query: 328
length of database: 2,362,478
effective HSP length: 73
effective length of query: 255
effective length of database: 1,997,186
effective search space: 509282430
effective search space used: 509282430
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)