GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002129-TA|BGIBMGA002129-PA|undefined
         (328 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0374 - 21598480-21598487,21599547-21600672                       31   1.7  
11_03_0093 - 9852075-9852871,9852911-9853009,9853208-9853646,985...    30   2.9  
01_06_0928 + 33085403-33089224                                         30   2.9  
05_01_0120 - 828834-831143                                             29   6.8  

>01_05_0374 - 21598480-21598487,21599547-21600672
          Length = 377

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 265 GKIQMWVDIYPMENGVYIPPPVNIEPQKVEDYALKAIIRQVKLFRFKDQKIKVPK 319
           GKI+    +YP   G  +PP V +EP  +    L  +  Q+  F  +D     P+
Sbjct: 80  GKIKTDQSVYPEAEGPQVPPKVKLEPHALR-LDLVILSNQIPFFVLEDLFTMTPR 133


>11_03_0093 -
           9852075-9852871,9852911-9853009,9853208-9853646,
           9853803-9854129
          Length = 553

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 4/100 (4%)

Query: 163 ENTKSVSTGGVDLGKGYFSNYPSNEAAKVLVRVYLDVRITLCLSRGLPPHGSSSGSIADR 222
           EN K+++T G     G     PSN++A   V+    V    C +R LP    S   +AD 
Sbjct: 279 ENVKAITTRGGT--NGIAKEAPSNDSADKEVQPEKTVPQIYCDTRLLPFPQRSRKPLADE 336

Query: 223 KENICLSILHKWH-TLPIIGHHLVPEHVE-TRSLFNPEKL 260
           +    + ++ K H  +P++    VP +    + + N ++L
Sbjct: 337 QLARFVEVIQKIHINVPLLDAMQVPTYARYLKDILNNKRL 376


>01_06_0928 + 33085403-33089224
          Length = 1273

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 10/105 (9%)

Query: 126 STFKLYNGNKTGIPEKDDQIF---CGYLKAGIAIYKWPPPENTKSVSTGGVDLGKGYFSN 182
           +T    + N  G  E  D+I    C  + AG ++ +W    +   V  GG  +GK   + 
Sbjct: 140 TTTSFSSSNVVGRDEDRDRIIDILCKPVNAGGSMARWY--SSLAIVGVGG--MGKTTLAQ 195

Query: 183 YPSNEAAKVLVRVYLDVRITLCLSRGLPPHGSSSGSIADRKENIC 227
           +  N+     V  Y D RI +C+SR L  H  +   I    +  C
Sbjct: 196 HVYNDER---VAQYFDARIWVCISRKLDVHRHTQEIIESAGKGEC 237


>05_01_0120 - 828834-831143
          Length = 769

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 4/42 (9%)

Query: 135 KTGIPEKDDQI--FCGYLKAGIAIYKWPPPENTKSVSTGGVD 174
           KTGI E+ D I   CG L+  + +Y+WP  E   + +   +D
Sbjct: 648 KTGITERTDSISEACGNLQ--LLVYRWPSKEKLTTFTRKDLD 687


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.139    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,781,540
Number of Sequences: 37544
Number of extensions: 483734
Number of successful extensions: 953
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 952
Number of HSP's gapped (non-prelim): 4
length of query: 328
length of database: 14,793,348
effective HSP length: 82
effective length of query: 246
effective length of database: 11,714,740
effective search space: 2881826040
effective search space used: 2881826040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)