GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002129-TA|BGIBMGA002129-PA|undefined
         (328 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79755-11|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical p...    61   9e-10
U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.        61   9e-10
Z75532-2|CAA99812.1|  839|Caenorhabditis elegans Hypothetical pr...    30   2.6  
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AL117203-18|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    29   3.4  
Z48585-7|CAA88482.1|  160|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AB079299-1|BAB84566.1|  160|Caenorhabditis elegans troponin C pr...    28   7.9  

>Z79755-11|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical
            protein F43G9.6 protein.
          Length = 2034

 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 29/64 (45%), Positives = 45/64 (70%), Gaps = 1/64 (1%)

Query: 243  HLVPEHVETRSLFNPEKLGFEQGKIQMWVDIYPMENGVYIPPPVNIEPQKVEDYALKAII 302
            +LVPEHVE+R LF+ +    ++G+++M+VDI+PME G  IP P NI P+K  +Y L+  +
Sbjct: 1650 NLVPEHVESRPLFSDKGGRTQKGELRMFVDIFPMEYGA-IPAPFNIAPRKPINYQLRIAV 1708

Query: 303  RQVK 306
              V+
Sbjct: 1709 MDVR 1712


>U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.
          Length = 2034

 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 29/64 (45%), Positives = 45/64 (70%), Gaps = 1/64 (1%)

Query: 243  HLVPEHVETRSLFNPEKLGFEQGKIQMWVDIYPMENGVYIPPPVNIEPQKVEDYALKAII 302
            +LVPEHVE+R LF+ +    ++G+++M+VDI+PME G  IP P NI P+K  +Y L+  +
Sbjct: 1650 NLVPEHVESRPLFSDKGGRTQKGELRMFVDIFPMEYGA-IPAPFNIAPRKPINYQLRIAV 1708

Query: 303  RQVK 306
              V+
Sbjct: 1709 MDVR 1712


>Z75532-2|CAA99812.1|  839|Caenorhabditis elegans Hypothetical
           protein C54G10.2 protein.
          Length = 839

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 3/99 (3%)

Query: 87  IQDNDLPYTEDSTRFFSEIKVYDAELEKQPEFSKFKDWCSTFKLYNGNKTGIPEKDDQIF 146
           + D++   ++DS   F+ I V     EK+ E  K K+  S  K +   K  IP K ++  
Sbjct: 177 VSDDEFVDSDDSFDTFTPITVKKKTPEKRKETPKKKELPSVKKEF-PKKQSIPVKKEKE- 234

Query: 147 CGYLKAGIAIYKWPPPENTKSVSTGGVDLGKGYFSNYPS 185
               K  +++ K PP   ++S S+  V      F   PS
Sbjct: 235 -TPQKKALSVKKDPPKVTSESSSSSQVSTSSVVFQPKPS 272


>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical
           protein F15D4.7 protein.
          Length = 2268

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 89  DNDLPYTEDSTRFFSEIKVYDAELEKQPEFSKFKDWCSTFKLYNGNKTGIPEKDDQIFCG 148
           + D+  TED T    EI+  D E++     S   ++ ST  + N N T   E D +    
Sbjct: 119 EEDVALTEDETNV--EIEEDDLEVKHDQRSSTSSNYQSTSSVINTNATANLENDQRDEIE 176

Query: 149 YLKAGIA 155
            LKA IA
Sbjct: 177 KLKAEIA 183


>AL117203-18|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
           protein F15D4.7 protein.
          Length = 2268

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 89  DNDLPYTEDSTRFFSEIKVYDAELEKQPEFSKFKDWCSTFKLYNGNKTGIPEKDDQIFCG 148
           + D+  TED T    EI+  D E++     S   ++ ST  + N N T   E D +    
Sbjct: 119 EEDVALTEDETNV--EIEEDDLEVKHDQRSSTSSNYQSTSSVINTNATANLENDQRDEIE 176

Query: 149 YLKAGIA 155
            LKA IA
Sbjct: 177 KLKAEIA 183


>Z48585-7|CAA88482.1|  160|Caenorhabditis elegans Hypothetical
           protein ZK673.7 protein.
          Length = 160

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 105 IKVYDAELEKQPEFSKFKDWCSTFKLYNGNKTGIPEKDDQIFCGYLKAG 153
           IK +DA+   + EF +F    + F + N N  G+ E+  + F  Y K G
Sbjct: 60  IKEFDADGSGEIEFEEFAAMVANFVVNNENDEGLEEELREAFRLYDKEG 108


>AB079299-1|BAB84566.1|  160|Caenorhabditis elegans troponin C
           protein.
          Length = 160

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 105 IKVYDAELEKQPEFSKFKDWCSTFKLYNGNKTGIPEKDDQIFCGYLKAG 153
           IK +DA+   + EF +F    + F + N N  G+ E+  + F  Y K G
Sbjct: 60  IKEFDADGSGEIEFEEFAAMVANFVVNNENDEGLEEELREAFRLYDKEG 108


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.139    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,215,181
Number of Sequences: 27539
Number of extensions: 423371
Number of successful extensions: 797
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 789
Number of HSP's gapped (non-prelim): 9
length of query: 328
length of database: 12,573,161
effective HSP length: 82
effective length of query: 246
effective length of database: 10,314,963
effective search space: 2537480898
effective search space used: 2537480898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)