Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002129-TA|BGIBMGA002129-PA|undefined
(328 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g05570.1 68418.m00605 transducin family protein / WD-40 repea... 30 1.9
At5g06570.2 68418.m00742 expressed protein similar to PrMC3 [Pin... 30 2.5
At5g06570.1 68418.m00741 expressed protein similar to PrMC3 [Pin... 30 2.5
At4g19850.1 68417.m02909 lectin-related low similarity to PP2 le... 28 7.5
At3g16970.1 68416.m02168 self-incompatibility protein-related si... 28 7.5
At2g20880.1 68415.m02461 AP2 domain-containing transcription fac... 28 7.5
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 28 7.5
At5g37620.1 68418.m04531 DC1 domain-containing protein contains ... 28 9.9
At4g28030.1 68417.m04021 GCN5-related N-acetyltransferase (GNAT)... 28 9.9
At3g46420.1 68416.m05032 leucine-rich repeat family protein / pr... 28 9.9
At1g51490.1 68414.m05795 glycosyl hydrolase family 1 protein con... 28 9.9
>At5g05570.1 68418.m00605 transducin family protein / WD-40 repeat
family protein similar to unknown protein (pir||T04661);
contains Pfam PF00400: WD domain, G-beta repeat (4
copies, 2 weak)|8683726|gb|AV524198.1|AV524198
Length = 1124
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 245 VPEHVETRSLFNPEKLGFEQGKIQMWVDIYPMENGVYIPPP 285
VP HV+ L G++ G +++W YP + +YI P
Sbjct: 481 VPSHVDDYKLERLYMAGYQDGSMRIWDATYPCLSLIYILEP 521
>At5g06570.2 68418.m00742 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 329
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 178 GYFSNYPSNEAAKVLVRVYLD 198
G++SNYPS+EAA+ ++R+ D
Sbjct: 303 GFYSNYPSSEAAEQVLRIIGD 323
>At5g06570.1 68418.m00741 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 329
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 178 GYFSNYPSNEAAKVLVRVYLD 198
G++SNYPS+EAA+ ++R+ D
Sbjct: 303 GFYSNYPSSEAAEQVLRIIGD 323
>At4g19850.1 68417.m02909 lectin-related low similarity to PP2
lectin polypeptide [Cucurbita maxima] GI:410437
Length = 194
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 216 SGSIADRKENICLSILHKWHTLPIIGHHLVPEHVETRSLFNPEKLGFEQGK 266
+G +R+EN+ L +KW +P + PEH+ + F+ ++ +Q K
Sbjct: 130 TGETKERRENVNLLERNKWVEIPAGEFMISPEHLSGKIEFSMLEVKSDQWK 180
>At3g16970.1 68416.m02168 self-incompatibility protein-related
similar to S1 self-incompatibility protein GB:CAA52380
[Papaver rhoeas] (Proc. Natl. Acad. Sci. U.S.A. 91 (6),
2265-2269 (1994))
Length = 140
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 16 GHLPDGYKMKVKNYDMGIKTTSM-GNFGLIGRSEITPAVDERQGYEYAPNLEWFKIH 71
GHLP Y K KN D+G + ++ G + R + G+ + L WF I+
Sbjct: 38 GHLPLRYHCKSKNDDLGDRNMAVNGTWSFEFRPSVFGGTLFFCGFIWDKELHWFDIY 94
>At2g20880.1 68415.m02461 AP2 domain-containing transcription
factor, putative similar to AP2 domain containing
protein RAP2.4 [Arabidopsis thaliana] GI:2281633
Length = 336
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 46 RSEITPAVDERQGYEYAPNLEWFKIHNGMECTGQILMSVQLIQDNDLPYTEDSTRFFSEI 105
+ ++ P V ++Q + W I + +G+++M L Q++DLP T + FS
Sbjct: 126 QQQVQPYVAQQQQQQQHLLQYWRDILK-LSPSGRMMMMNMLRQESDLPLTRPPVQPFSAT 184
Query: 106 KVY 108
K+Y
Sbjct: 185 KLY 187
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 9 KQIKSFDGHLPDGYKMKVKNYDMGIKTTSMGNF 41
K+ +SFDG+L DG K +K + I+ ++G+F
Sbjct: 370 KEFRSFDGYLTDGCKPNLKRVEQFIQ--AVGSF 400
>At5g37620.1 68418.m04531 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 232 HKWHTLPIIGHHLVPEHVETRSLFNPEKLGFEQGKIQMWVDIYPMENG-VYIPPPVNIEP 290
H H L ++ P++ + + L EK +QG V + + + PPPV +E
Sbjct: 185 HPQHPLKLLKFAEAPDYADKKCLLCDEKFDQDQGLHHCDVCNFSICRACMKNPPPVGVES 244
Query: 291 QKVEDYALKAIIRQV 305
++ L + R++
Sbjct: 245 PTTHEHQLHLVPRRI 259
>At4g28030.1 68417.m04021 GCN5-related N-acetyltransferase (GNAT)
family protein contains Pfam profile PF00583:
acetyltransferase, GNAT family
Length = 274
Score = 27.9 bits (59), Expect = 9.9
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 102 FSEIKVYDAELEKQPEFSKFKDWCSTFKLYNGNKTGIPEKDDQIFCGYLKAGIAIYKWPP 161
F+ + +A L S F+D CS K +G +D++ G L +W P
Sbjct: 116 FTRVACINATLPLSQLSSSFEDLCSACKFSDG-------IEDRVVVGSLDLNQC--RWLP 166
Query: 162 PENTKSVSTG-GVDLGKGYFSN 182
E + G GVD + Y SN
Sbjct: 167 DEIAGTKPEGIGVDFARAYLSN 188
>At3g46420.1 68416.m05032 leucine-rich repeat family protein /
protein kinase family protein contains leucine rich
repeat (LRR) domains, INTERPRO:IPR001611; contains
serine/threonine protein kinases active-site signature,
Prosite:PS00108
Length = 838
Score = 27.9 bits (59), Expect = 9.9
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 43 LIGRSEITPAVDERQGYEYAPNLEWFKIHNGMECTGQIL-----MSVQLIQDNDLPYTED 97
LI R +IT +D Y W + M C MS +I + TE+
Sbjct: 749 LISRGDITRIIDPNLQGNYNSRSVWRALELAMSCANPTSEKRPNMSQVVIDLKECLATEN 808
Query: 98 STRFFSEIKVYDAELEKQPEF 118
STR ++ + ++L++ F
Sbjct: 809 STRSEKDMSSHSSDLDRSMNF 829
>At1g51490.1 68414.m05795 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; similar to Cyanogenic Beta-Glucosidase
(GI:1311386) (pdb:1CBG) [Trifolium repens] (J. Mol.
Biol. 229 (3), 791-793 (1993))
Length = 484
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 239 IIGHHLVPEHVETRSLFNPEKLGFEQGKI 267
I+GHH + H+E SL+ F+ GKI
Sbjct: 219 IVGHHELLAHMEAVSLYRKRYQKFQGGKI 247
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.139 0.433
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,897,589
Number of Sequences: 28952
Number of extensions: 409792
Number of successful extensions: 720
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 714
Number of HSP's gapped (non-prelim): 11
length of query: 328
length of database: 12,070,560
effective HSP length: 81
effective length of query: 247
effective length of database: 9,725,448
effective search space: 2402185656
effective search space used: 2402185656
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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