GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002128-TA|BGIBMGA002128-PA|IPR000008|C2
calcium-dependent membrane targeting, IPR008973|C2
calcium/lipid-binding region, CaLB
         (205 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    36   0.004
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    31   0.16 
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    27   1.5  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    27   2.0  
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       26   4.5  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    25   6.0  
SPAC6F6.10c |arc2|arc34|ARP2/3 actin-organizing complex subunit ...    25   7.9  

>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 35.9 bits (79), Expect = 0.004
 Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 9/113 (7%)

Query: 31  RYIQILVTVLEASKLHWNNPRAATSYVLLS---IGKKKYRTTIRRNMLEPYYGENFTFD- 86
           R  Q  V   + + + +N P  +T+   +     G +KYR T R + LE    ++  FD 
Sbjct: 27  RLQQSSVVTCQETIMFFNAPEPSTNVFTIQSKKFGTRKYRPTYRLSKLEEVTSDSEPFDY 86

Query: 87  LFMSIREMQRTILWLAVMEP-----RCCAPPRSVGEAGIELATIWALPHHRAF 134
           +F+SI+   R      ++EP       C    S G  G+E A     P +  F
Sbjct: 87  VFVSIKPNSRNFQLSNILEPVITAKHTCIVYNSTGAIGVEEALQRQYPENPIF 139


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 56  YVLLSIGKKKYRTTIRRN--MLEPYYGENFTFDLFMSIREMQRTILWLAVMEPRCCAPPR 113
           Y  L  G   ++T  +++  ML  YYG N    +F +  EM    L+L    PR   PP+
Sbjct: 129 YSTLHQGASSHKTVTKKHNWMLRLYYGNNKVLFIFCAANEMFFVALYLLSFTPR--TPPK 186


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 56  YVLLSIGKKKYRTTIRRNMLEPYYGENFTFDL 87
           +V+ +  K  +RT   R+ L P Y E F F++
Sbjct: 308 FVITAFSKNIFRTKWLRHNLNPVYNEKFLFEV 339


>SPAC11G7.02 |pub1||ubiquitin-protein ligase
          E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 767

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 28 DSSRYIQILVTVLEASKLHWNNP-RAATSYVLLSI-GKKKYRTTIRRNMLEPYYGENF 83
          +S++  +I VT++ A  L+  +  R    + +L++ G++ + TT  +  L PY+ E F
Sbjct: 3  NSAQSRRIRVTIVAADGLYKRDVFRFPDPFAVLTVDGEQTHTTTAIKKTLNPYWNETF 60


>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 70  IRRNMLEP--YYGENFTFDLFMSIREMQRTILWLAVMEPRCCA 110
           + RN+LE   Y     TF +++SIR +   ++ L      CCA
Sbjct: 13  LNRNLLEANKYKLSEITFKVYISIRRLLIVVITLYRRIVECCA 55


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 152 GFLKVDISIIFRGDSQILP-SVDNYEKVEEAGTIERANNP 190
           G +K   +++   D++I+  ++D  E +   G ++RANNP
Sbjct: 419 GAIKPLCNLLACQDNKIIQVALDGIENILRVGELDRANNP 458


>SPAC6F6.10c |arc2|arc34|ARP2/3 actin-organizing complex subunit
           Arc34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 125 IWALPHHRAFHKWAQLD--SRNDPSEA 149
           + A P HRAF K A+L   +R DP  A
Sbjct: 118 VLAAPFHRAFTKQAELADLARKDPENA 144


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.136    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 990,380
Number of Sequences: 5004
Number of extensions: 38597
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 83
Number of HSP's gapped (non-prelim): 7
length of query: 205
length of database: 2,362,478
effective HSP length: 70
effective length of query: 135
effective length of database: 2,012,198
effective search space: 271646730
effective search space used: 271646730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)