GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002127-TA|BGIBMGA002127-PA|IPR001356|Homeobox,
IPR009057|Homeodomain-like
         (137 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc...    36   0.002
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    34   0.007
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    28   0.59 
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    28   0.59 
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    27   1.0  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    26   1.8  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    25   5.5  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    24   7.3  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    24   9.7  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    24   9.7  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    24   9.7  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    24   9.7  

>SPBC21B10.13c |||transcription factor, homeobox type
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 36.3 bits (80), Expect = 0.002
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 21 QRTKRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQK--TGLSKRVLQVWFQNARAKW 78
          Q+ +R RT+     L  ++ YF     P   + ++L++K  + ++ R LQ+WFQN R   
Sbjct: 33 QKKRRRRTTDAEATL--LEQYFLKTPKPSLIERQELSKKLKSSMTPRELQIWFQNKRQSL 90

Query: 79 RRN 81
          RR+
Sbjct: 91 RRS 93


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 34.3 bits (75), Expect = 0.007
 Identities = 18/67 (26%), Positives = 32/67 (47%)

Query: 20  TQRTKRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWR 79
           T   K  +      QL  +   F+ + NP     +++ ++  + +R + +WFQN RAK +
Sbjct: 163 TSAPKSKKQRLTADQLAYLLREFSKDTNPPPAIREKIGRELNIPERSVTIWFQNRRAKSK 222

Query: 80  RNMMRQE 86
               RQE
Sbjct: 223 LISRRQE 229


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 9/32 (28%), Positives = 20/32 (62%)

Query: 63  SKRVLQVWFQNARAKWRRNMMRQETNGVNGHT 94
           S+R+L+V   + + +W +N++ +    + GHT
Sbjct: 621 SERILRVELSDMQTEWYKNILTKNYRALTGHT 652


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
            Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 20   TQRTKRMRTSFKHHQLRTMKSYFAINQNPDAK--DLKQLAQKTGLSKRVLQVWFQNARAK 77
            +Q++   R SF+         Y A+N        + KQL       K  L + F++A  +
Sbjct: 1030 SQQSHDDRESFRERMQILKSKYGALNAERAGLLGECKQLENSITKDKEELNMEFKDADER 1089

Query: 78   WRRNMMRQETNG 89
            +RR +++ +T G
Sbjct: 1090 FRRQLIKTKTTG 1101


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 94  TSIVPGNGGTPSIVPTAL-ILSEPLQPLED 122
           T I+PG+ GTP+++P    ++S PL   +D
Sbjct: 268 THILPGDNGTPTVLPERKNLISLPLLKQDD 297


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 19  HTQRTKR-MRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTG 61
           +T+ T R  + +FK   L +M      N+  DA DL ++  KTG
Sbjct: 146 YTKETAREFKKAFKERNLESMDYLMRHNEFNDAIDLNEVDIKTG 189


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 102 GTPSIVPTALILSEP 116
           G+PS+ PTAL L +P
Sbjct: 45  GSPSVEPTALYLQQP 59


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 11/39 (28%), Positives = 22/39 (56%)

Query: 50  AKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMMRQETN 88
           AK+ K+L +K   +++  +   Q  RAK+ + M R+  +
Sbjct: 729 AKEEKRLKKKEEKARKAEEKRLQKERAKYAKQMSRESAH 767


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 81  NMMRQETNGVNGHTSIVP--GNGGTP 104
           NM+RQ  NG + + S  P  GN  TP
Sbjct: 573 NMIRQGANGSDSNMSSSPVSGNSNTP 598


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 77   KWRRNMMRQETNGVNGHTSIVPGNGGTPSIVPTALILSEPLQPLED 122
            K R N+    +   N   + VPG+  T S     +  + P+ PLE+
Sbjct: 1425 KKRSNVNEYTSGNNNSPVTKVPGSSSTSSSSTQPINSTIPINPLEN 1470


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 91  NGHTSIVPGNGGTPSIVP 108
           NG T+++P    TPS+ P
Sbjct: 69  NGKTNVLPSYASTPSLSP 86


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 101 GGTPSIVPTALILSEPLQPLEDLRVHTPHPM 131
           G TP +V ++  L++P +  + L+    HPM
Sbjct: 104 GLTPDLVGSSNALNKPTRESDSLKHQKSHPM 134


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.130    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 585,549
Number of Sequences: 5004
Number of extensions: 21913
Number of successful extensions: 71
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 60
Number of HSP's gapped (non-prelim): 12
length of query: 137
length of database: 2,362,478
effective HSP length: 66
effective length of query: 71
effective length of database: 2,032,214
effective search space: 144287194
effective search space used: 144287194
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)