GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002127-TA|BGIBMGA002127-PA|IPR001356|Homeobox,
IPR009057|Homeodomain-like
         (137 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-13|CAD27764.1|  319|Anopheles gambiae putative transcri...    53   4e-09
AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced ...    48   1e-07
AF269155-1|AAF91400.1|   59|Anopheles gambiae transcription fact...    46   3e-07
U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         46   6e-07
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         46   6e-07
AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein hom...    44   1e-06
DQ383819-1|ABD38144.1|  377|Anopheles gambiae abdominal-B protein.     40   3e-05
AF230521-1|AAF36974.2|  185|Anopheles gambiae homeobox transcrip...    40   3e-05
AF080565-1|AAC31945.1|  324|Anopheles gambiae Antennapedia homeo...    40   3e-05
AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox prote...    38   9e-05
AF269156-1|AAF91401.1|   52|Anopheles gambiae transcription fact...    36   5e-04
AF269154-1|AAF91399.1|   76|Anopheles gambiae transcription fact...    34   0.002
AF080563-1|AAC31943.1|  310|Anopheles gambiae Ultrabithorax home...    32   0.008
AF080562-1|AAC31942.1|  327|Anopheles gambiae Ultrabithorax home...    32   0.008
AF269153-1|AAF91398.1|  109|Anopheles gambiae labial homeotic pr...    31   0.010
AF080566-1|AAC31946.1|  308|Anopheles gambiae abdominal-A homeot...    31   0.010
AY745226-1|AAU93493.1|   86|Anopheles gambiae cytochrome P450 pr...    23   3.6  
AF487534-1|AAL93295.1|  509|Anopheles gambiae cytochrome P450 CY...    22   8.4  

>AJ439060-13|CAD27764.1|  319|Anopheles gambiae putative
           transcription factor protein.
          Length = 319

 Score = 52.8 bits (121), Expect = 4e-09
 Identities = 24/68 (35%), Positives = 38/68 (55%)

Query: 19  HTQRTKRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKW 78
           H +R +R RT F   QL  +++ F     PD    ++LA K  L +  ++VWF+N RAKW
Sbjct: 183 HIKRKRRHRTIFTEEQLEQLEATFDKTHYPDVLLREKLAIKVDLKEERVEVWFKNRRAKW 242

Query: 79  RRNMMRQE 86
           R+    ++
Sbjct: 243 RKQKREEQ 250


>AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced
           homeotic protein protein.
          Length = 372

 Score = 48.0 bits (109), Expect = 1e-07
 Identities = 23/73 (31%), Positives = 38/73 (52%)

Query: 23  TKRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNM 82
           TKR RTS+  +Q   ++  F  N+    +   ++A    L++R +++WFQN R KW++  
Sbjct: 280 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 339

Query: 83  MRQETNGVNGHTS 95
                N V  H S
Sbjct: 340 KMASMNIVPYHMS 352


>AF269155-1|AAF91400.1|   59|Anopheles gambiae transcription
          factor Deformed protein.
          Length = 59

 Score = 46.4 bits (105), Expect = 3e-07
 Identities = 19/58 (32%), Positives = 34/58 (58%)

Query: 24 KRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRN 81
          KR RT++  HQ+  ++  F  N     +   ++A    LS+R +++WFQN R KW+++
Sbjct: 2  KRQRTAYTRHQILELEKEFHYNXYLTRRRRIEIAHTLVLSERQIKIWFQNRRMKWKKD 59


>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 45.6 bits (103), Expect = 6e-07
 Identities = 21/58 (36%), Positives = 38/58 (65%)

Query: 24  KRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRN 81
           KR RT+F + QL+ +K+ F  N+    K  + L+ + GL++  +++WFQN RAK +++
Sbjct: 499 KRPRTAFSNAQLQRLKNEFNENRYLTEKRRQTLSAELGLNEAQIKIWFQNKRAKIKKS 556


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 45.6 bits (103), Expect = 6e-07
 Identities = 21/58 (36%), Positives = 38/58 (65%)

Query: 24  KRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRN 81
           KR RT+F + QL+ +K+ F  N+    K  + L+ + GL++  +++WFQN RAK +++
Sbjct: 499 KRPRTAFSNAQLQRLKNEFNENRYLTEKRRQTLSAELGLNEAQIKIWFQNKRAKIKKS 556


>AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein
           homolog protein.
          Length = 394

 Score = 44.4 bits (100), Expect = 1e-06
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 4/87 (4%)

Query: 22  RTK-RMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRR 80
           RTK + R  +   Q   ++  F   +    +   +LAQ   LS+R +++WFQN RAK R+
Sbjct: 213 RTKDKYRVVYTDQQRLELEKEFHYTRYITIRRKAELAQNLQLSERQVKIWFQNRRAKDRK 272

Query: 81  NMMRQETNGVNGHTSIVPGNGGTPSIV 107
              + ET  V G    + G GG  S+V
Sbjct: 273 QKKKAETGSVGGG---MGGLGGGQSLV 296


>DQ383819-1|ABD38144.1|  377|Anopheles gambiae abdominal-B protein.
          Length = 377

 Score = 39.9 bits (89), Expect = 3e-05
 Identities = 18/72 (25%), Positives = 36/72 (50%)

Query: 24  KRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMM 83
           ++ R  +   Q   ++  F  N     +   +LA+   L++R +++WFQN R K ++N  
Sbjct: 271 RKKRKPYSKFQTLELEKEFLFNAYVSKQKRWELARNLNLTERQVKIWFQNRRMKNKKNSQ 330

Query: 84  RQETNGVNGHTS 95
           RQ     +G ++
Sbjct: 331 RQSAQANSGSSN 342


>AF230521-1|AAF36974.2|  185|Anopheles gambiae homeobox
          transcription factor protein.
          Length = 185

 Score = 39.9 bits (89), Expect = 3e-05
 Identities = 17/61 (27%), Positives = 35/61 (57%)

Query: 21 QRTKRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRR 80
          + +KR R S+  HQ   ++  F  N+  + +   ++A    L++R +++WFQN R K ++
Sbjct: 4  ESSKRTRQSYSRHQTIELEKEFHFNRYLNRRRRIEIASMLKLTERQIKIWFQNRRMKAKK 63

Query: 81 N 81
          +
Sbjct: 64 D 64


>AF080565-1|AAC31945.1|  324|Anopheles gambiae Antennapedia homeotic
           protein protein.
          Length = 324

 Score = 39.9 bits (89), Expect = 3e-05
 Identities = 18/75 (24%), Positives = 36/75 (48%)

Query: 24  KRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMM 83
           KR R ++  +Q   ++  F  N+    +   ++A    L++R +++WFQN R KW++   
Sbjct: 245 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENK 304

Query: 84  RQETNGVNGHTSIVP 98
            +   G      + P
Sbjct: 305 TKGEPGSGDENDMTP 319


>AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox protein
           protein.
          Length = 338

 Score = 38.3 bits (85), Expect = 9e-05
 Identities = 19/58 (32%), Positives = 34/58 (58%)

Query: 23  TKRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRR 80
           +KR+RT+F   QL  ++  FA N         ++A +  LS++ +++WFQN R K ++
Sbjct: 196 SKRIRTAFTSTQLLELEREFAGNMYLTRLRRIEIATRLRLSEKQVKIWFQNRRVKRKK 253


>AF269156-1|AAF91401.1|   52|Anopheles gambiae transcription
          factor zen protein.
          Length = 52

 Score = 35.9 bits (79), Expect = 5e-04
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 24 KRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNAR 75
          KR RT+F   QL  ++  F  N+        +L +K  L++R +++WFQN R
Sbjct: 1  KRSRTAFTSSQLVELEKEFHSNRYLCRPRRIELTRKLALTERQIKIWFQNRR 52


>AF269154-1|AAF91399.1|   76|Anopheles gambiae transcription
          factor proboscipedia protein.
          Length = 76

 Score = 33.9 bits (74), Expect = 0.002
 Identities = 16/52 (30%), Positives = 30/52 (57%)

Query: 24 KRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNAR 75
          +R+RT++ + QL  ++  F  N+        ++A    L++R ++VWFQN R
Sbjct: 25 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRR 76


>AF080563-1|AAC31943.1|  310|Anopheles gambiae Ultrabithorax
           homeotic protein IVa protein.
          Length = 310

 Score = 31.9 bits (69), Expect = 0.008
 Identities = 14/59 (23%), Positives = 31/59 (52%)

Query: 24  KRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNM 82
           +R R ++  +Q   ++  F  N     +   ++A    L++R +++WFQN R K ++ +
Sbjct: 220 RRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 278


>AF080562-1|AAC31942.1|  327|Anopheles gambiae Ultrabithorax
           homeotic protein IIa protein.
          Length = 327

 Score = 31.9 bits (69), Expect = 0.008
 Identities = 14/59 (23%), Positives = 31/59 (52%)

Query: 24  KRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNM 82
           +R R ++  +Q   ++  F  N     +   ++A    L++R +++WFQN R K ++ +
Sbjct: 237 RRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 295


>AF269153-1|AAF91398.1|  109|Anopheles gambiae labial homeotic
           protein protein.
          Length = 109

 Score = 31.5 bits (68), Expect = 0.010
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 27  RTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAK 77
           RT+F + QL  ++  F  N+        ++A    L++  +++WFQN R K
Sbjct: 57  RTNFTNKQLTELEKEFHFNKYLTRARRIEIANALHLNETQVKIWFQNRRMK 107


>AF080566-1|AAC31946.1|  308|Anopheles gambiae abdominal-A homeotic
           protein protein.
          Length = 308

 Score = 31.5 bits (68), Expect = 0.010
 Identities = 14/59 (23%), Positives = 30/59 (50%)

Query: 24  KRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNM 82
           +R R ++   Q   ++  F  N     +   ++A    L++R +++WFQN R K ++ +
Sbjct: 139 RRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 197


>AY745226-1|AAU93493.1|   86|Anopheles gambiae cytochrome P450
           protein.
          Length = 86

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 79  RRNMMRQETNGVNGHTSIVPGNGGTPSIVPTALILSEP 116
           ++ +MR+      GH   +    GTP ++P   I  +P
Sbjct: 9   KKYIMRKGFRDEQGHDMSIYVREGTPILIPVLAIHMDP 46


>AF487534-1|AAL93295.1|  509|Anopheles gambiae cytochrome P450
           CYP6P3 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 102 GTPSIVPTALILSEPLQPLEDLRVHTPHPMAFN 134
           GT  ++P   ++  P   ++    H P P  FN
Sbjct: 395 GTKHVIPKRTLVQIPAYAIQRDPDHYPDPERFN 427


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.318    0.130    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,981
Number of Sequences: 2123
Number of extensions: 4912
Number of successful extensions: 23
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 18
length of query: 137
length of database: 516,269
effective HSP length: 58
effective length of query: 79
effective length of database: 393,135
effective search space: 31057665
effective search space used: 31057665
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)