GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002127-TA|BGIBMGA002127-PA|IPR001356|Homeobox,
IPR009057|Homeodomain-like
         (137 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    48   4e-08
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    47   8e-08
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    46   1e-07
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    43   1e-06
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    42   3e-06
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    39   2e-05
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    34   6e-04
AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.        32   0.003
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    31   0.004
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   4.7  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    20   8.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   8.3  

>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 48.0 bits (109), Expect = 4e-08
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 20 TQRTKRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWR 79
          T   KR RT+F   QL  +K  FA N+    +  +QL++  GL++  +++WFQN RAK +
Sbjct: 17 TPEEKRPRTAFSGEQLARLKREFAENRYLTERRRQQLSRDLGLNEAQIKIWFQNKRAKIK 76

Query: 80 R 80
          +
Sbjct: 77 K 77


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 46.8 bits (106), Expect = 8e-08
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 24 KRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRR 80
          KR RT+F   QL  +K  FA N+    +  +QL++  GL++  +++WFQN RAK ++
Sbjct: 21 KRPRTAFSAEQLARLKREFAENRYLTERRRQQLSRDLGLTEAQIKIWFQNKRAKIKK 77


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 46.0 bits (104), Expect = 1e-07
 Identities = 22/72 (30%), Positives = 37/72 (51%)

Query: 24 KRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMM 83
          KR RTS+  +Q   ++  F  N+    +   ++A    L++R +++WFQN R KW++   
Sbjct: 9  KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 68

Query: 84 RQETNGVNGHTS 95
              N V  H S
Sbjct: 69 MASMNIVPYHMS 80


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 42.7 bits (96), Expect = 1e-06
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 24  KRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMM 83
           KR R ++  +Q   ++  F  N+    +   ++A    L++R +++WFQN R KW++   
Sbjct: 271 KRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENK 330

Query: 84  RQETNGV-NGHTSIVP 98
            + T G  +G T I P
Sbjct: 331 SKGTPGSGDGDTEISP 346


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 41.5 bits (93), Expect = 3e-06
 Identities = 17/60 (28%), Positives = 33/60 (55%)

Query: 21 QRTKRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRR 80
          +  +R RT+F + QL  +++ F   +     +   LA    L++  +++WFQN R KW++
Sbjct: 6  REARRARTAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 65


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 39.1 bits (87), Expect = 2e-05
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 24 KRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMM 83
          KR R ++  +Q   ++  F  N+    +   ++A    L++R +++WFQN R KW++   
Sbjct: 9  KRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENA 68

Query: 84 R 84
          R
Sbjct: 69 R 69


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 33.9 bits (74), Expect = 6e-04
 Identities = 16/57 (28%), Positives = 30/57 (52%)

Query: 24 KRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRR 80
          ++ RT F   QL +++  F   Q     +  + +    L++  +++WFQN RAK +R
Sbjct: 10 RKPRTPFTTQQLLSLEKKFREKQYLTIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 66


>AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.
          Length = 43

 Score = 31.9 bits (69), Expect = 0.003
 Identities = 11/28 (39%), Positives = 21/28 (75%)

Query: 55 QLAQKTGLSKRVLQVWFQNARAKWRRNM 82
          +LA   GL++  +++WFQN R+K+++ M
Sbjct: 13 ELAASLGLTQTQVKIWFQNRRSKYKKMM 40


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 31.1 bits (67), Expect = 0.004
 Identities = 14/59 (23%), Positives = 30/59 (50%)

Query: 24 KRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNM 82
          +R R ++   Q   ++  F  N     +   ++A    L++R +++WFQN R K ++ +
Sbjct: 9  RRGRQTYTRFQTLELEKEFHYNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 67


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 32 HHQLRTMKSYFAINQNPD 49
          HHQ+   +S + + +NPD
Sbjct: 78 HHQVLYQQSPYLMYENPD 95


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 6/11 (54%), Positives = 9/11 (81%)

Query: 88  NGVNGHTSIVP 98
           NG++G TS+ P
Sbjct: 141 NGISGETSVCP 151


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 8/34 (23%), Positives = 18/34 (52%)

Query: 29  SFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGL 62
           + + H++R    +  +  NP    L+++A+ T L
Sbjct: 693 TMESHEVRCTAVFLLMKTNPPLSMLQRMAEFTKL 726


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.130    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,775
Number of Sequences: 429
Number of extensions: 1562
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of query: 137
length of database: 140,377
effective HSP length: 52
effective length of query: 85
effective length of database: 118,069
effective search space: 10035865
effective search space used: 10035865
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)