Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002127-TA|BGIBMGA002127-PA|IPR001356|Homeobox,
IPR009057|Homeodomain-like
(137 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g46680.1 68415.m05825 homeobox-leucine zipper protein 7 (HB-7... 46 7e-06
At1g79840.1 68414.m09327 homeobox-leucine zipper protein 10 (HB-... 46 9e-06
At3g61890.1 68416.m06951 homeobox-leucine zipper protein 12 (HB-... 46 1e-05
At1g17920.1 68414.m02218 homeobox-leucine zipper family protein ... 45 2e-05
At4g40060.1 68417.m05672 homeobox-leucine zipper protein 16 (HB-... 44 3e-05
At4g36740.1 68417.m05213 homeobox-leucine zipper family protein ... 44 3e-05
At5g46880.1 68418.m05777 homeobox-leucine zipper family protein ... 44 4e-05
At1g69780.1 68414.m08029 homeobox-leucine zipper protein 13 (HB-... 44 5e-05
At5g65310.1 68418.m08216 homeobox-leucine zipper protein 5 (HB-5... 43 8e-05
At5g15150.1 68418.m01775 homeobox-leucine zipper protein 7 (HAT7... 43 8e-05
At2g22430.1 68415.m02660 homeobox-leucine zipper protein 6 (HB-6... 43 8e-05
At5g52170.1 68418.m06476 homeobox-leucine zipper family protein ... 42 1e-04
At3g01470.1 68416.m00071 homeobox-leucine zipper protein 5 (HAT5... 42 1e-04
At1g73360.1 68414.m08491 homeobox-leucine zipper family protein ... 42 1e-04
At5g39760.1 68418.m04816 zinc finger homeobox protein-related / ... 42 2e-04
At4g17710.1 68417.m02645 homeobox-leucine zipper family protein ... 41 3e-04
At3g01220.1 68416.m00028 homeobox-leucine zipper protein, putati... 40 6e-04
At2g18550.1 68415.m02161 homeobox-leucine zipper family protein ... 40 6e-04
At5g66700.1 68418.m08408 homeobox-leucine zipper family protein ... 40 8e-04
At1g05230.2 68414.m00529 homeobox-leucine zipper family protein ... 40 8e-04
At1g05230.1 68414.m00528 homeobox-leucine zipper family protein ... 40 8e-04
At4g21750.1 68417.m03148 L1 specific homeobox gene (ML1) / ovule... 39 0.001
At4g04890.1 68417.m00712 homeobox-leucine zipper protein protode... 39 0.001
At5g53980.1 68418.m06715 homeobox-leucine zipper family protein ... 39 0.001
At5g03790.1 68418.m00346 homeobox-leucine zipper family protein ... 39 0.001
At2g02540.1 68415.m00193 zinc finger homeobox family protein / Z... 38 0.002
At2g36610.1 68415.m04488 homeobox-leucine zipper family protein ... 38 0.003
At1g34650.1 68414.m04309 homeobox-leucine zipper family protein ... 37 0.004
At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identica... 37 0.006
At3g61150.1 68416.m06843 homeobox-leucine zipper family protein ... 37 0.006
At4g17460.1 68417.m02612 homeobox-leucine zipper protein 1 (HAT1... 36 0.013
At1g70920.1 68414.m08183 homeobox-leucine zipper protein, putati... 35 0.017
At1g69600.1 68414.m08005 zinc finger homeobox family protein / Z... 35 0.017
At1g26960.1 68414.m03287 homeobox-leucine zipper protein, putati... 35 0.017
At3g03260.1 68416.m00322 homeobox-leucine zipper family protein ... 35 0.022
At2g32370.1 68415.m03956 homeobox-leucine zipper family protein ... 35 0.022
At1g27050.1 68414.m03298 homeobox-leucine zipper family protein ... 35 0.022
At2g01430.1 68415.m00066 homeobox-leucine zipper protein 17 (HB-... 34 0.039
At1g14440.2 68414.m01713 zinc finger homeobox family protein / Z... 34 0.039
At1g14440.1 68414.m01712 zinc finger homeobox family protein / Z... 34 0.039
At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2... 33 0.052
At4g16780.1 68417.m02535 homeobox-leucine zipper protein 4 (HAT4... 33 0.068
At4g37790.1 68417.m05348 homeobox-leucine zipper protein 22 (HAT... 33 0.091
At2g23760.2 68415.m02838 BEL1-like homeobox 4 protein (BLH4) 33 0.091
At2g23760.1 68415.m02837 BEL1-like homeobox 4 protein (BLH4) 33 0.091
At1g75430.1 68414.m08762 homeodomain-containing protein contains... 32 0.12
At3g50890.1 68416.m05572 zinc finger homeobox family protein / Z... 32 0.16
At2g27990.1 68415.m03392 homeodomain-containing protein 32 0.16
At5g17320.1 68418.m02029 homeobox-leucine zipper family protein ... 31 0.21
At2g16400.1 68415.m01877 homeodomain-containing protein 31 0.21
At4g24660.1 68417.m03530 zinc finger homeobox family protein / Z... 31 0.28
At3g60390.1 68416.m06754 homeobox-leucine zipper protein 3 (HAT3... 31 0.28
At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2) 31 0.37
At5g02030.1 68418.m00123 homeodomain protein (BELLRINGER) severa... 30 0.48
At2g22800.1 68415.m02706 homeobox-leucine zipper protein 9 (HAT9... 30 0.48
At1g19700.1 68414.m02457 homeobox-leucine zipper family protein ... 30 0.48
At4g34610.1 68417.m04916 homeodomain-containing protein similari... 30 0.64
At4g32040.1 68417.m04561 homeobox protein knotted-1 like 5 (KNAT... 30 0.64
At4g29940.1 68417.m04259 pathogenesis-related homeodomain protei... 30 0.64
At2g44910.1 68415.m05590 homeobox-leucine zipper protein 4 (HB-4... 30 0.64
At2g35940.2 68415.m04412 homeodomain-containing protein contains... 30 0.64
At2g35940.1 68415.m04411 homeodomain-containing protein contains... 30 0.64
At5g41410.1 68418.m05031 homeodomain protein (BEL1) identical to... 29 0.84
At5g25220.1 68418.m02990 homeobox protein knotted-1 like 3 (KNAT... 29 1.1
At5g11060.1 68418.m01292 homeobox protein knotted-1 like 4 (KNAT... 29 1.1
At2g27220.1 68415.m03271 homeodomain-containing protein 29 1.1
At1g75410.1 68414.m08760 BEL1-like homeodomain 3 protein (BLH3) ... 29 1.1
At5g65410.1 68418.m08226 zinc finger homeobox family protein / Z... 29 1.5
At5g27000.1 68418.m03221 kinesin motor protein-related non-conse... 29 1.5
At5g06710.1 68418.m00758 homeobox-leucine zipper protein 14 (HAT... 29 1.5
At2g01500.1 68415.m00073 homeobox-leucine zipper transcription f... 29 1.5
At1g75240.1 68414.m08741 zinc finger homeobox family protein / Z... 29 1.5
At4g32980.1 68417.m04691 homeobox protein (ATH1) identical to SW... 28 2.6
At1g62990.1 68414.m07113 homeodomain transcription factor (KNAT7... 27 3.4
At1g70510.1 68414.m08115 homeobox protein knotted-1 like 2 (KNAT... 27 4.5
At4g35550.1 68417.m05052 homeobox-leucine zipper protein (HB-2) ... 27 5.9
At4g03250.1 68417.m00444 homeobox-leucine zipper family protein ... 27 5.9
At5g46810.1 68418.m05767 expressed protein contains similarity t... 26 7.9
At4g08150.1 68417.m01346 homeobox protein knotted-1 like 1 (KNAT... 26 7.9
At2g33690.1 68415.m04129 late embryogenesis abundant protein, pu... 26 7.9
At2g14210.1 68415.m01583 MADS-box protein (ANR1) identical to AN... 26 7.9
>At2g46680.1 68415.m05825 homeobox-leucine zipper protein 7 (HB-7)
/ HD-ZIP transcription factor 7 identical to
homeobox-leucine zipper protein ATHB-7 (HD-ZIP protein
ATHB-7) (SP:P46897) [Arabidopsis thaliana];
Length = 258
Score = 46.4 bits (105), Expect = 7e-06
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 20 TQRTKRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWR 79
+ K + F Q+++++ F + + QLA++ GL R + +WFQN RA+W+
Sbjct: 26 SNHNKNNQRRFSDEQIKSLEMMFESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWK 85
Query: 80 RNMMRQETN 88
+ E N
Sbjct: 86 SKQLETEYN 94
>At1g79840.1 68414.m09327 homeobox-leucine zipper protein 10 (HB-10)
/ HD-ZIP transcription factor 10 / homeobox protein
(GLABRA2) identical to homeobox protein (GLABRA2)
(homeobox-leucine zipper protein ATHB-10) (HD-ZIP
protein ATHB-10) GB:P46607 [Arabidopsis thaliana]
Length = 747
Score = 46.0 bits (104), Expect = 9e-06
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 24 KRMRTSFKHH---QLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRR 80
KR R + H Q+R M++ F +PD K +QL+++ GL+ R ++ WFQN R + +
Sbjct: 99 KRKRKKYHRHTTDQIRHMEALFKETPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKA 158
Query: 81 NMMRQETN 88
R E +
Sbjct: 159 IQERHENS 166
>At3g61890.1 68416.m06951 homeobox-leucine zipper protein 12
(HB-12) / HD-ZIP transcription factor 12 identical to
homeobox-leucine zipper protein ATHB-12 (GI:6899887)
[Arabidopsis thaliana]
Length = 235
Score = 45.6 bits (103), Expect = 1e-05
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 20 TQRTKRMRTS-----FKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNA 74
T K+M+ S F Q+++++ F + + Q+A++ GL R + +WFQN
Sbjct: 19 TMNKKKMKKSNNQKRFSEEQIKSLELIFESETRLEPRKKVQVARELGLQPRQVAIWFQNK 78
Query: 75 RAKWRRNMMRQETN 88
RA+W+ + +E N
Sbjct: 79 RARWKTKQLEKEYN 92
>At1g17920.1 68414.m02218 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar
to A20 (GI:1881536) [Arabidopsis thaliana]; similar to
homeobox protein GI:1173622 from [Phalaenopsis sp.
SM9108]
Length = 687
Score = 45.2 bits (102), Expect = 2e-05
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 21 QRTKRMRTSFKH--HQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAK 77
++ K+ + +H HQ++ ++S F Q+PD K QL+++ GL+ R ++ WFQN R +
Sbjct: 17 KKNKKKKRFHRHTPHQIQRLESTFNECQHPDEKQRNQLSRELGLAPRQIKFWFQNRRTQ 75
>At4g40060.1 68417.m05672 homeobox-leucine zipper protein 16 (HB-16)
/ HD-ZIP transcription factor 16 identical to
homeodomain leucine-zipper protein ATHB-16 (GP:5668909|)
{Arabidopsis thaliana}
Length = 294
Score = 44.4 bits (100), Expect = 3e-05
Identities = 19/74 (25%), Positives = 36/74 (48%)
Query: 19 HTQRTKRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKW 78
H + K Q++ ++ F + + + +LAQ+ GL R + VWFQN RA+W
Sbjct: 52 HHMGLSEKKRRLKVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARW 111
Query: 79 RRNMMRQETNGVNG 92
+ + ++ + G
Sbjct: 112 KTKQLEKDYGVLKG 125
>At4g36740.1 68417.m05213 homeobox-leucine zipper family protein
similar to CRHB7 (GP:3868841) {Ceratopteris richardii}
and to homeotic protein VAHOX1 (PIR:T07734)
[Lycopersicon esculentum]
Length = 217
Score = 44.4 bits (100), Expect = 3e-05
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 34 QLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMMRQETNGV-NG 92
Q+ ++ F +++ +LA + GL R + VWFQN RA+W+ + +E N + N
Sbjct: 64 QVNMLEMSFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKNKRLEEEYNKLKNS 123
Query: 93 HTSIV 97
H ++V
Sbjct: 124 HDNVV 128
>At5g46880.1 68418.m05777 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
HD-Zip homeo domain OCL4 protein GI:8920425 from [Zea
mays]; contains Pfam PF00046: Homeobox domain and Pfam
PF01852: START domain
Length = 820
Score = 44.0 bits (99), Expect = 4e-05
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 32 HHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMMRQE 86
+ Q++ M++ F N +PD K K+L+ + GL R ++ WFQN R + + R E
Sbjct: 120 NRQIQEMEALFKENPHPDDKQRKRLSAELGLKPRQVKFWFQNRRTQMKAQQDRNE 174
>At1g69780.1 68414.m08029 homeobox-leucine zipper protein 13 (HB-13)
/ HD-ZIP transcription factor 13 identical to homeobox
gene 13 protein (GP:12325190) [Arabidopsis thaliana]
Length = 294
Score = 43.6 bits (98), Expect = 5e-05
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 34 QLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMMRQE 86
Q++T++ F + + + QLA+ GL R + +WFQN RA+W+ + ++
Sbjct: 93 QVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKD 145
>At5g65310.1 68418.m08216 homeobox-leucine zipper protein 5 (HB-5) /
HD-ZIP transcription factor 5 identical to
homeobox-leucine zipper protein ATHB-5 (HD-ZIP protein
ATHB-5) (SP:P46667) [Arabidopsis thaliana]
Length = 312
Score = 42.7 bits (96), Expect = 8e-05
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 34 QLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMMRQE 86
Q++ ++ F I+ + + +LAQ+ GL R + +WFQN RA+W+ + ++
Sbjct: 80 QVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERD 132
>At5g15150.1 68418.m01775 homeobox-leucine zipper protein 7 (HAT7) /
HD-ZIP protein 7 / HD-ZIP protein (HB-3) identical to
homeobox-leucine zipper protein HAT7 (HD-ZIP protein 7)
(HD-ZIP protein ATHB-3) (SP:Q00466) [Arabidopsis
thaliana]
Length = 314
Score = 42.7 bits (96), Expect = 8e-05
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 34 QLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMMRQE 86
Q+R ++ F + + + QLA+ GL R + +WFQN RA+W+ + ++
Sbjct: 123 QVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERD 175
>At2g22430.1 68415.m02660 homeobox-leucine zipper protein 6 (HB-6) /
HD-ZIP transcription factor 6 identical to
homeobox-leucine zipper protein ATHB-6 (HD-ZIP protein
ATHB-6) (SP:P46668) [Arabidopsis thaliana]
Length = 311
Score = 42.7 bits (96), Expect = 8e-05
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 24 KRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMM 83
K+ R S +Q++ ++ F + + + +LAQ+ GL R + VWFQN RA+W+ +
Sbjct: 62 KKRRLSI--NQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 119
Query: 84 RQE 86
++
Sbjct: 120 EKD 122
>At5g52170.1 68418.m06476 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
Anthocyaninless2 (ANL2) (GP:5702094) [Arabidopsis
thaliana]; contains Pfam PF00046: Homeobox domain and
Pfam PF01852: START domain
Length = 682
Score = 42.3 bits (95), Expect = 1e-04
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 3 SLAYDXXXXXXXXXXXHTQRTKRMRTSFKHH-----QLRTMKSYFAINQNPDAKDLKQLA 57
SL+ D QR K+ + K+H Q++ ++S+F +P+ K +L
Sbjct: 32 SLSDDSFDAMSGDEDKQEQRPKKKKRKTKYHRHTSYQIQELESFFKECPHPNEKQRLELG 91
Query: 58 QKTGLSKRVLQVWFQNARAKWRRNMMRQE 86
+K L + ++ WFQN R + + + R E
Sbjct: 92 KKLTLESKQIKFWFQNRRTQMKTQLERHE 120
>At3g01470.1 68416.m00071 homeobox-leucine zipper protein 5 (HAT5) /
HD-ZIP protein 5 / HD-ZIP protein (HB-1) identical to
homeobox-leucine zipper protein HAT5 (HD-ZIP protein 5)
(HD-ZIP protein ATHB-1) GB:Q02283 [Arabidopsis thaliana]
Length = 272
Score = 42.3 bits (95), Expect = 1e-04
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 24 KRMRTSFKHHQLRTMKSYFAINQ-NPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNM 82
KR T+ + H L KS+ N+ P+ K QLA+K GL R + VWFQN RA+W+
Sbjct: 69 KRRLTTEQVHLLE--KSFETENKLEPERKT--QLAKKLGLQPRQVAVWFQNRRARWKTKQ 124
Query: 83 MRQE 86
+ ++
Sbjct: 125 LERD 128
>At1g73360.1 68414.m08491 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein
protodermal factor2 (GI:14276060) [Arabidopsis
thaliana]; similar to homeobox protein GI:1173621 from
[ Phalaenopsis sp.]
Length = 722
Score = 41.9 bits (94), Expect = 1e-04
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 20 TQRTKRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWR 79
T R K+ Q++ ++S F +PD K QL+++ GL+ R ++ WFQN R + +
Sbjct: 29 TDRKKKRYHRHTAQQIQRLESSFKECPHPDEKQRNQLSRELGLAPRQIKFWFQNRRTQLK 88
Query: 80 RNMMRQETNGV 90
R + + +
Sbjct: 89 AQHERADNSAL 99
>At5g39760.1 68418.m04816 zinc finger homeobox protein-related /
ZF-HD homeobox protein-related predicted proteins,
Arabidopsis thaliana
Length = 334
Score = 41.5 bits (93), Expect = 2e-04
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 24 KRMRTSFKHHQLRTMKSYFAI----NQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWR 79
KR RT F Q M + Q D D++ ++ G+ K VL+VW N + +
Sbjct: 201 KRFRTKFSQFQKEKMHEFAERVGWKMQKRDEDDVRDFCRQIGVDKSVLKVWMHNNKNTFN 260
Query: 80 R-----NMMRQETNGVNGHTSIVPG 99
R N +RQ NG HT I+ G
Sbjct: 261 RRDIAGNEIRQIDNGGGNHTPILAG 285
>At4g17710.1 68417.m02645 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
HD-Zip homeo domain OCL4 protein (GI:8920425) [Zea
mays]; contains Pfam PF00046: Homeobox domain and Pfam
PF01852: START domain
Length = 709
Score = 40.7 bits (91), Expect = 3e-04
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 34 QLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMMRQE 86
Q++ M++ F N +PD K +L++K GLS ++ WFQN R + + R +
Sbjct: 99 QIQQMEALFKENAHPDTKTRLRLSKKLGLSPIQVKFWFQNKRTQIKAQQSRSD 151
>At3g01220.1 68416.m00028 homeobox-leucine zipper protein, putative
/ HD-ZIP transcription factor, putative similar to
homeobox-leucine zipper protein, HAT7 (GB:Q00466)
[Arabidopsis thaliana]
Length = 286
Score = 39.9 bits (89), Expect = 6e-04
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 34 QLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMMRQE 86
Q++ ++ F + + + QLA+ G+ R + +WFQN RA+W+ + ++
Sbjct: 95 QVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQLERD 147
>At2g18550.1 68415.m02161 homeobox-leucine zipper family protein
similar to CRHB6 (GI:3868839) [Ceratopteris richardii];
contains Pfam PF00046: Homeobox domain
Length = 220
Score = 39.9 bits (89), Expect = 6e-04
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 34 QLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMMRQE 86
Q+R ++ F + +++ +LA + GL R + VWFQN RA+W+ + E
Sbjct: 69 QVRMLEISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKRVEDE 121
>At5g66700.1 68418.m08408 homeobox-leucine zipper family protein
similar to Homeobox-leucine zipper protein HAT5 (HD-ZIP
protein 5) (SP:Q02283) [Arabidopsis thaliana]; contains
Pfam PF00046: Homeobox domain
Length = 228
Score = 39.5 bits (88), Expect = 8e-04
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 34 QLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMMRQETNGV-NG 92
Q+ ++ F ++ +++A + GL R + VWFQN RA+W+ + +E + N
Sbjct: 79 QVNMLEYSFGNEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKNKKLEEEYAKLKNH 138
Query: 93 HTSIVPG 99
H ++V G
Sbjct: 139 HDNVVLG 145
>At1g05230.2 68414.m00529 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
homeobox 1 (GP:12002853) {Picea abies}; Strong
similarity to Phalaenopsis homeobox protein (gb|U34743)
Length = 721
Score = 39.5 bits (88), Expect = 8e-04
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 34 QLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMMRQETN 88
Q++ M+++F +PD K KQL+++ L ++ WFQN R + + + R E +
Sbjct: 75 QIQEMEAFFKECPHPDDKQRKQLSRELNLEPLQVKFWFQNKRTQMKNHHERHENS 129
>At1g05230.1 68414.m00528 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
homeobox 1 (GP:12002853) {Picea abies}; Strong
similarity to Phalaenopsis homeobox protein (gb|U34743)
Length = 721
Score = 39.5 bits (88), Expect = 8e-04
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 34 QLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMMRQETN 88
Q++ M+++F +PD K KQL+++ L ++ WFQN R + + + R E +
Sbjct: 75 QIQEMEAFFKECPHPDDKQRKQLSRELNLEPLQVKFWFQNKRTQMKNHHERHENS 129
>At4g21750.1 68417.m03148 L1 specific homeobox gene (ML1) /
ovule-specific homeobox protein A20 nearly identical to
meristem L1 layer homeobox protein A20 (AtML1)
[Arabidopsis thaliana] GI:1881536, protodermal factor2
(PDF2) [Arabidopsis thaliana] GI:14276060
Length = 762
Score = 39.1 bits (87), Expect = 0.001
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 21 QRTKRMRTSFKH--HQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKW 78
QR + + +H Q++ ++S+F +PD K K+L+++ L ++ WFQN R +
Sbjct: 58 QRPNKKKRYHRHTQRQIQELESFFKECPHPDDKQRKELSRELSLEPLQVKFWFQNKRTQM 117
Query: 79 RRNMMRQE 86
+ R E
Sbjct: 118 KAQHERHE 125
>At4g04890.1 68417.m00712 homeobox-leucine zipper protein
protodermal factor 2 (PDF2) identical to GP|14276060|
protodermal factor2 (GI:14276060)
Length = 743
Score = 39.1 bits (87), Expect = 0.001
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 20 TQRTKRMRTSFKH--HQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAK 77
+QR + + +H Q++ ++S+F +PD K K+L++ L ++ WFQN R +
Sbjct: 57 SQRPNKKKRYHRHTQRQIQELESFFKECPHPDDKQRKELSRDLNLEPLQVKFWFQNKRTQ 116
Query: 78 WRRNMMRQE 86
+ R E
Sbjct: 117 MKAQSERHE 125
>At5g53980.1 68418.m06715 homeobox-leucine zipper family protein
contains Pfam PF00046: Homeobox domain; similar to
homeobox protein PpHB5 (GI:7415622) [Physcomitrella
patens]
Length = 156
Score = 38.7 bits (86), Expect = 0.001
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 24 KRMRTSFKHHQLRTMKSYFAINQNPDAKDLK-QLAQKTGLSKRVLQVWFQNARAKWR 79
K + Q+R ++ F +N+ + DLK QL+ + GL +R + VWFQN RA+++
Sbjct: 9 KNKKKRLTQDQVRQLEKCFTMNKKLEP-DLKLQLSNQLGLPQRQVAVWFQNKRARFK 64
>At5g03790.1 68418.m00346 homeobox-leucine zipper family protein
similar to homeobox-leucine zipper protein Athb-7
(SP:P46897) [Arabidopsis thaliana]; contains Pfam
PF00046: Homeobox domain
Length = 236
Score = 38.7 bits (86), Expect = 0.001
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 34 QLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMMRQ 85
QL +++ F D+ +L+++ GL R + VWFQN RA+W+ + Q
Sbjct: 86 QLASLERSFQEEIKLDSDRKVKLSRELGLQPRQIAVWFQNRRARWKAKQLEQ 137
>At2g02540.1 68415.m00193 zinc finger homeobox family protein /
ZF-HD homeobox family protein contains Pfam domain,
PF04770: ZF-HD protein dimerisation region
Length = 310
Score = 37.9 bits (84), Expect = 0.002
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 19 HTQRTKRMRTSFKHHQLRTMKSYFAIN----QNPDAKDLKQLAQKTGLSKRVLQVWFQNA 74
H Q+ KR RT F Q M S+ Q + ++QL Q+ G+ +RVL+VW N
Sbjct: 219 HNQK-KRFRTKFTQEQKEKMISFAERVGWKIQRQEESVVQQLCQEIGIRRRVLKVWMHN- 276
Query: 75 RAKWRRNMMRQETNGVNGHTSIVPGN 100
+ + +++N V+ + + GN
Sbjct: 277 ----NKQNLSKKSNNVSNNVDLSAGN 298
>At2g36610.1 68415.m04488 homeobox-leucine zipper family protein
similar to homeobox protein PpHB8 (GP:7415628)
[Physcomitrella patens]; contains PfamPF00046: Homeobox
domain
Length = 185
Score = 37.5 bits (83), Expect = 0.003
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 47 NPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMM 83
NPD K +L+++ GL R + VWFQN +A+W+ +
Sbjct: 102 NPDRK--MKLSKELGLQPRQIAVWFQNRKARWKNKQL 136
>At1g34650.1 68414.m04309 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar
to homeobox 1 (GP:12002853) {Picea abies}; contains
Pfam PF00046: Homeobox domain and Pfam PF01852: START
domain
Length = 708
Score = 37.1 bits (82), Expect = 0.004
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 27 RTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWR 79
R +HQ++ ++++F +PD +QL + L + ++ WFQN R + R
Sbjct: 20 RRHHSNHQVQRLEAFFHECPHPDDSQRRQLGNELNLKHKQIKFWFQNRRTQAR 72
>At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identical
to Anthocyaninless2 [Arabidopsis thaliana] GI:5702094
Length = 802
Score = 36.7 bits (81), Expect = 0.006
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 34 QLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMMRQE 86
Q++ ++S F +PD K +L+++ L R ++ WFQN R + + + R E
Sbjct: 145 QIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197
>At3g61150.1 68416.m06843 homeobox-leucine zipper family protein /
homeodomain GLABRA2 like protein 1 (HD-GL2-1) similar to
Anthocyaninless2 (ANL2) (GP:5702094) Arabidopsis
thaliana, EMBL:AF077335
Length = 808
Score = 36.7 bits (81), Expect = 0.006
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 34 QLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMMRQE 86
Q++ ++S F +PD K L+++ L R ++ WFQN R + + + R E
Sbjct: 121 QIQDLESVFKECAHPDEKQRLDLSRRLNLDPRQVKFWFQNRRTQMKTQIERHE 173
>At4g17460.1 68417.m02612 homeobox-leucine zipper protein 1 (HAT1) /
HD-ZIP protein 1 identical to Homeobox-leucine zipper
protein HAT1 (SP:P46600) [Arabidopsis thaliana]
Length = 282
Score = 35.5 bits (78), Expect = 0.013
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 23 TKRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAK 77
T R + Q ++ F + + K LA+K GL+ R ++VWFQN RA+
Sbjct: 132 TCRKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRAR 186
>At1g70920.1 68414.m08183 homeobox-leucine zipper protein, putative
/ HD-ZIP transcription factor, putative similar to
homeodomain leucine zipper protein GI:5006851 from
[Oryza sativa]
Length = 206
Score = 35.1 bits (77), Expect = 0.017
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 21 QRTKRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAK 77
+R K++R + + L ++ F N K K LA LS+R ++VWFQN RA+
Sbjct: 66 RRRKKLRLTKEQSHL--LEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRAR 120
>At1g69600.1 68414.m08005 zinc finger homeobox family protein /
ZF-HD homeobox family protein
Length = 242
Score = 35.1 bits (77), Expect = 0.017
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 24 KRMRTSFKHHQLRTMKSY-----FAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKW 78
KR RT F Q M+++ + IN D K +++ + G+ + VL+VW N +
Sbjct: 157 KRTRTKFTPEQKIKMRAFAEKAGWKIN-GCDEKSVREFCNEVGIERGVLKVWMHNNKYSL 215
Query: 79 RRNMMRQETNGVNGHTSIVPGNGGTPS 105
+R+ +G+ +T G+G + S
Sbjct: 216 LNGKIREIEHGLCLNTHSNDGDGSSSS 242
>At1g26960.1 68414.m03287 homeobox-leucine zipper protein, putative
/ HD-ZIP transcription factor, putative similar to
homeobox-leucine zipper protein HAT7 (HD-ZIP protein 7)
(HD-ZIP protein ATHB-3 (SP:Q00466| [Arabidopsis
thaliana]; similar to Helianthus annuus gi|349379, and
carrot, gi|1435022. Contains Homeobox domain motif
Length = 255
Score = 35.1 bits (77), Expect = 0.017
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 34 QLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMMRQE 86
QL+ ++ F + ++ +LA+ GL R + +WFQN RA+ + + ++
Sbjct: 79 QLKALEKDFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSKTKQLEKD 131
>At3g03260.1 68416.m00322 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar
to L1 specific homeobox gene ATML1/ovule-specific
homeobox protein A20, GB:CAB36819
Length = 699
Score = 34.7 bits (76), Expect = 0.022
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 27 RTSFKH--HQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAK 77
RT +H Q++ +++YF +PD + QL ++ L ++ WFQN R +
Sbjct: 25 RTCHRHTPQQIQRLEAYFKECPHPDERQRNQLCRELKLEPDQIKFWFQNKRTQ 77
>At2g32370.1 68415.m03956 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
HD-Zip homeo domain OCL5 protein (GI:8920427) [Zea
mays]; contains Pfam PF00046: Homeobox domain and Pfam
PF01852: START domain
Length = 721
Score = 34.7 bits (76), Expect = 0.022
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 19 HTQRTKRMRTSFKHH---QLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNAR 75
+ Q + + + H Q+ M+++F +PD K L+ + GL ++ WFQN R
Sbjct: 61 NNQAPRHKKKKYNRHTQLQISEMEAFFRECPHPDDKQRYDLSAQLGLDPVQIKFWFQNKR 120
Query: 76 AKWRRNMMR---QETNGVNGH 93
+ + R E +N H
Sbjct: 121 TQNKNQQERFENSELRNLNNH 141
>At1g27050.1 68414.m03298 homeobox-leucine zipper family protein
contains Pfam profile:PF00046 Homeobox domain and Pfam
profile:PF00076 RNA recognition motif
Length = 444
Score = 34.7 bits (76), Expect = 0.022
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 34 QLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMMRQETNGV 90
QLR ++ F + + LA+K GL + VWFQN RA+++ + + + +
Sbjct: 25 QLRLLEESFEEEKRLEPDRKLWLAEKLGLQPSQVAVWFQNRRARYKTKQLEHDCDSL 81
>At2g01430.1 68415.m00066 homeobox-leucine zipper protein 17 (HB-17)
/ HD-ZIP transcription factor 17 identical to
(GI:18857716) homeodomain-leucine zipper protein ATHB-17
(GI:18857716) [Arabidopsis thaliana]
Length = 275
Score = 33.9 bits (74), Expect = 0.039
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 25 RMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMMR 84
R + Q R ++ F N + K + LA+ L R ++VWFQN RA+ +
Sbjct: 138 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEVLAKHLMLRPRQIEVWFQNRRARSKLKQTE 197
Query: 85 QE 86
E
Sbjct: 198 ME 199
>At1g14440.2 68414.m01713 zinc finger homeobox family protein /
ZF-HD homeobox family protein
Length = 312
Score = 33.9 bits (74), Expect = 0.039
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 24 KRMRTSFKHHQLRTMKSY-----FAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKW 78
KR RT F Q M S+ + I + D +++ ++ G+ +RVL+VW N + +
Sbjct: 219 KRFRTKFTPEQKEKMLSFAEKVGWKIQRQEDCV-VQRFCEEIGVKRRVLKVWMHNNKIHF 277
Query: 79 -RRNMMRQETNG---VNGHTSI-VPGNGGTPSIVP 108
++N + E N +N ++ + GN IVP
Sbjct: 278 SKKNNINLEDNDNEKINNLNNVDLSGNNDMTKIVP 312
>At1g14440.1 68414.m01712 zinc finger homeobox family protein /
ZF-HD homeobox family protein
Length = 312
Score = 33.9 bits (74), Expect = 0.039
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 24 KRMRTSFKHHQLRTMKSY-----FAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKW 78
KR RT F Q M S+ + I + D +++ ++ G+ +RVL+VW N + +
Sbjct: 219 KRFRTKFTPEQKEKMLSFAEKVGWKIQRQEDCV-VQRFCEEIGVKRRVLKVWMHNNKIHF 277
Query: 79 -RRNMMRQETNG---VNGHTSI-VPGNGGTPSIVP 108
++N + E N +N ++ + GN IVP
Sbjct: 278 SKKNNINLEDNDNEKINNLNNVDLSGNNDMTKIVP 312
>At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2) /
HD-ZIP protein 2 identical to homeobox-leucine zipper
protein HAT2 (HD-ZIP protein 2) [Arabidopsis thaliana]
SP:P46601; contains Pfam profiles PF04618: HD-ZIP
protein N terminus, PF02183: Homeobox associated leucine
zipper, PF00046: Homeobox domain
Length = 283
Score = 33.5 bits (73), Expect = 0.052
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 23 TKRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAK 77
T R + Q ++ F + + K LA+K L+ R ++VWFQN RA+
Sbjct: 127 TSRKKLRLSKDQSAFLEETFKEHNTLNPKQKLALAKKLNLTARQVEVWFQNRRAR 181
>At4g16780.1 68417.m02535 homeobox-leucine zipper protein 4 (HAT4) /
HD-ZIP protein 4 SP|Q05466|HAT4_ARATH Homeobox-leucine
zipper protein HAT4 (HD-ZIP protein 4) (SP:Q05466)
[Arabidopsis thaliana] (HD-ZIP homeotic protein Athb-2
Length = 284
Score = 33.1 bits (72), Expect = 0.068
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 25 RMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAK 77
R + Q ++ F + + K + LA++ GL R ++VWFQN RA+
Sbjct: 128 RKKLRLSKDQSAILEETFKDHSTLNPKQKQALAKQLGLRARQVEVWFQNRRAR 180
>At4g37790.1 68417.m05348 homeobox-leucine zipper protein 22 (HAT22)
/ HD-ZIP protein 22 identical to homeobox-leucine zipper
protein HAT22 (HD-ZIP protein 22) (SP:P46604)
[Arabidopsis thaliana]
Length = 278
Score = 32.7 bits (71), Expect = 0.091
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 25 RMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAK 77
R + Q ++ F ++ + K + LA++ L R ++VWFQN RA+
Sbjct: 125 RKKLRLTKQQSALLEDNFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 177
>At2g23760.2 68415.m02838 BEL1-like homeobox 4 protein (BLH4)
Length = 627
Score = 32.7 bits (71), Expect = 0.091
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 44 INQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMMRQ 85
+N P D LA++TGLS+ + WF NAR + + M+ +
Sbjct: 448 LNPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEE 489
>At2g23760.1 68415.m02837 BEL1-like homeobox 4 protein (BLH4)
Length = 627
Score = 32.7 bits (71), Expect = 0.091
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 44 INQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMMRQ 85
+N P D LA++TGLS+ + WF NAR + + M+ +
Sbjct: 448 LNPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEE 489
>At1g75430.1 68414.m08762 homeodomain-containing protein contains
'Homeobox' domain signature, Prosite:PS00027
Length = 297
Score = 32.3 bits (70), Expect = 0.12
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 40 SYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMMRQ 85
S F + P+ + LA +TGLSK + WF NAR + + M+ +
Sbjct: 229 SVFLLLNYPNEAEKLVLASQTGLSKNQVSNWFINARVRLWKPMIEE 274
>At3g50890.1 68416.m05572 zinc finger homeobox family protein /
ZF-HD homeobox family protein hypothetical protein
T8K22.16 - Arabidopsis thaliana, chromosome II BAC
T8K22, PIR2:T00609
Length = 249
Score = 31.9 bits (69), Expect = 0.16
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 21 QRTKRMRTSFKHHQLRTMKSYFAI----NQNPDAKDLKQLAQKTGLSKRVLQVWFQNARA 76
++ KR+RT Q MK + Q D +++ + + L ++V +VW N +
Sbjct: 179 RKKKRVRTKINEEQKEKMKEFAERLGWRMQKKDEEEIDKFCRMVNLRRQVFKVWMHNNKQ 238
Query: 77 KWRRN 81
+RN
Sbjct: 239 AMKRN 243
>At2g27990.1 68415.m03392 homeodomain-containing protein
Length = 584
Score = 31.9 bits (69), Expect = 0.16
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 48 PDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMMRQ----ETNGV-NGHTS--IVPGN 100
P D + LA +TGLS+ + WF NAR + + M+ + ET + N TS I P N
Sbjct: 452 PTDSDKQMLATQTGLSRNQVSNWFINARVRLWKPMVEEIHTLETKAIKNADTSHNIEPSN 511
>At5g17320.1 68418.m02029 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar
to Roc1 (GI:1907210) [Oryza sativa]; contains Pfam
PF00046: Homeobox domain and Pfam PF01852: START domain
Length = 718
Score = 31.5 bits (68), Expect = 0.21
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 32 HHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAK 77
+ Q+ +++YF +PD + L ++ L + ++ WFQN R +
Sbjct: 35 NEQIHRLETYFKECPHPDEFQRRLLGEELNLKPKQIKFWFQNKRTQ 80
>At2g16400.1 68415.m01877 homeodomain-containing protein
Length = 482
Score = 31.5 bits (68), Expect = 0.21
Identities = 20/67 (29%), Positives = 31/67 (46%)
Query: 19 HTQRTKRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKW 78
HT R +R LR ++ P D LA++TGLS+ + WF NAR +
Sbjct: 284 HTWRPQRGLPDSSVLVLRAWLFEHFLHPYPKDSDKIMLARQTGLSRGQVSNWFINARVRL 343
Query: 79 RRNMMRQ 85
+ M+ +
Sbjct: 344 WKPMVEE 350
>At4g24660.1 68417.m03530 zinc finger homeobox family protein /
ZF-HD homeobox family protein hypothetical protein
T8K22.16, Arabidopsis thalianachromosome II BAC T8K22,
PATX:G3184285
Length = 220
Score = 31.1 bits (67), Expect = 0.28
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 23 TKRMRTSFKHHQLRTMKSY-----FAINQNPDAKDLKQLAQKTGLSKRVLQVWFQN 73
TKR RT F Q M ++ + I ++ D ++Q +TG+ ++VL++W N
Sbjct: 157 TKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVA-VEQFCAETGVRRQVLKIWMHN 211
>At3g60390.1 68416.m06754 homeobox-leucine zipper protein 3 (HAT3) /
HD-ZIP protein 3 identical to Homeobox-leucine zipper
protein HAT3 (SP:P46602) [Arabidopsis thaliana]
Length = 315
Score = 31.1 bits (67), Expect = 0.28
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 23 TKRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAK 77
+ R + Q ++ F + + K LA++ L R ++VWFQN RA+
Sbjct: 159 SSRKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRAR 213
>At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)
Length = 638
Score = 30.7 bits (66), Expect = 0.37
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 48 PDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMMRQ 85
P D LA++TGLS+ + WF NAR + + M+ +
Sbjct: 525 PSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEE 562
>At5g02030.1 68418.m00123 homeodomain protein (BELLRINGER) several
homeodomain proteins;
Length = 575
Score = 30.3 bits (65), Expect = 0.48
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 48 PDAKDLKQLAQKTGLSKRVLQVWFQNARAK-WR 79
P D LA++TGLS+ + WF NAR + W+
Sbjct: 376 PTDTDKLMLAKQTGLSRNQVSNWFINARVRVWK 408
>At2g22800.1 68415.m02706 homeobox-leucine zipper protein 9 (HAT9) /
HD-ZIP protein 9 identical to GB:U09341
Length = 274
Score = 30.3 bits (65), Expect = 0.48
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 25 RMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAK 77
R + Q ++ F + + K + LA++ L R ++VWFQN RA+
Sbjct: 112 RKKLRLTKQQSALLEESFKDHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRAR 164
>At1g19700.1 68414.m02457 homeobox-leucine zipper family protein
similar to BEL1-like homeodomain 1 (GI:13877517)
[Arabidopsis thaliana]; similar to homeodomain protein
GI:7239157 from (Malus domestica); contains weak hit to
Pfam profile PF00046: Homeobox domain
Length = 538
Score = 30.3 bits (65), Expect = 0.48
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 48 PDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMMRQ 85
P + LA++TGLSK + WF NAR + + M+ +
Sbjct: 379 PKESEKIMLAKQTGLSKNQVANWFINARVRLWKPMIEE 416
>At4g34610.1 68417.m04916 homeodomain-containing protein similaritry
to homeotic protein BEL1, Arabidopsis thaliana,
PIR2:A57632
Length = 532
Score = 29.9 bits (64), Expect = 0.64
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 48 PDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMMRQ 85
P D LA++TGLS+ + WF NAR + + M+ +
Sbjct: 342 PKDSDKIMLARQTGLSRGQVSNWFINARVRLWKPMVEE 379
>At4g32040.1 68417.m04561 homeobox protein knotted-1 like 5 (KNAT5)
/ homeodomain containing protein 1 (H1) identical to
homeobox protein knotted-1 like 5 (KNAT5) SP:P48002 from
[Arabidopsis thaliana]
Length = 383
Score = 29.9 bits (64), Expect = 0.64
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 48 PDAKDLKQLAQKTGLSKRVLQVWFQNARAK-WRRNMMRQET 87
P +D +L Q+TGL + + WF N R + W N T
Sbjct: 331 PTEEDKAKLVQETGLQLKQINNWFINQRKRNWNSNSSTSST 371
>At4g29940.1 68417.m04259 pathogenesis-related homeodomain protein
(PRHA) identical to Pathogenesis-related homeodomain
protein (PRHA) (SP:P48785) [Arabidopsis thaliana)
Length = 796
Score = 29.9 bits (64), Expect = 0.64
Identities = 18/99 (18%), Positives = 38/99 (38%)
Query: 24 KRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMM 83
+R + + ++ FA + P +LA++ L + WF+N R RN
Sbjct: 454 RRRMFRLPRNAVEKLRQVFAETELPSKAVRDRLAKELSLDPEKVNKWFKNTRYMALRNRK 513
Query: 84 RQETNGVNGHTSIVPGNGGTPSIVPTALILSEPLQPLED 122
+ ++ G+ G +++ +E L+D
Sbjct: 514 TESVKQPGDSKTVSGGDSGPEAVMENNTETNEVQDTLDD 552
>At2g44910.1 68415.m05590 homeobox-leucine zipper protein 4 (HB-4) /
HD-ZIP protein 4 identical to Homeobox-leucine zipper
protein ATHB-4 (HD-ZIP protein ATHB-4) (SP:P92953)
[Arabidopsis thaliana]
Length = 318
Score = 29.9 bits (64), Expect = 0.64
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 25 RMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAK 77
R + Q ++ F + + K LA++ L R ++VWFQN RA+
Sbjct: 162 RKKLRLSKDQALVLEETFKEHSTLNPKQKLALAKQLNLRARQVEVWFQNRRAR 214
>At2g35940.2 68415.m04412 homeodomain-containing protein contains
'Homeobox' domain signature, Prosite:PS00027
Length = 680
Score = 29.9 bits (64), Expect = 0.64
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 48 PDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMMRQ 85
P D LA++TGL++ + WF NAR + + M+ +
Sbjct: 413 PKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEE 450
>At2g35940.1 68415.m04411 homeodomain-containing protein contains
'Homeobox' domain signature, Prosite:PS00027
Length = 680
Score = 29.9 bits (64), Expect = 0.64
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 48 PDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMMRQ 85
P D LA++TGL++ + WF NAR + + M+ +
Sbjct: 413 PKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEE 450
>At5g41410.1 68418.m05031 homeodomain protein (BEL1) identical to
cDNA homeobox protein (BEL1) GI:28202124
Length = 611
Score = 29.5 bits (63), Expect = 0.84
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 48 PDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMMRQ 85
P D LA++TGLS+ + WF NAR + + M+ +
Sbjct: 419 PSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMIEE 456
>At5g25220.1 68418.m02990 homeobox protein knotted-1 like 3 (KNAT3)
identical to homeobox protein knotted-1 like 3 (KNAT3)
SP:P48000 from [Arabidopsis thaliana]
Length = 431
Score = 29.1 bits (62), Expect = 1.1
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 48 PDAKDLKQLAQKTGLSKRVLQVWFQNARAK-WRRN 81
P +D +L Q+TGL + + WF N R + W N
Sbjct: 372 PTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 406
>At5g11060.1 68418.m01292 homeobox protein knotted-1 like 4 (KNAT4)
identical to homeobox protein knotted-1 like 4 ( KNAT4)
SP:P48001 from [Arabidopsis thaliana]
Length = 393
Score = 29.1 bits (62), Expect = 1.1
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 48 PDAKDLKQLAQKTGLSKRVLQVWFQNARAK-WRRN 81
P +D +L Q+TGL + + WF N R + W N
Sbjct: 336 PTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 370
>At2g27220.1 68415.m03271 homeodomain-containing protein
Length = 431
Score = 29.1 bits (62), Expect = 1.1
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 48 PDAKDLKQLAQKTGLSKRVLQVWFQNARAK-WR 79
P D LA++TGL+K + WF NAR + W+
Sbjct: 256 PRDLDKVMLAKQTGLTKSQVSNWFINARVRMWK 288
>At1g75410.1 68414.m08760 BEL1-like homeodomain 3 protein (BLH3)
identical to BEL1-like homeodomain 3 (GI:13877515)
[Arabidopsis thaliana]
Length = 524
Score = 29.1 bits (62), Expect = 1.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 48 PDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMMRQ 85
P + L+++TGLSK + WF NAR + + M+ +
Sbjct: 374 PKESEKIMLSKQTGLSKNQVANWFINARVRLWKPMIEE 411
>At5g65410.1 68418.m08226 zinc finger homeobox family protein /
ZF-HD homeobox family protein similar to hypothetical
proteins (GP|4220524)(GP|3184285|)(Arabidopsis); ZP-HD
homeobox family protein GP|13374061 (Flaveria
bidentis);GP:5091602 {Oryza sativa}
Length = 279
Score = 28.7 bits (61), Expect = 1.5
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 24 KRMRTSFKHHQLRTMKSYFA-IN---QNPDAKDLKQLAQKTGLSKRVLQVWFQN 73
KR RT F Q M + I Q D + +++ Q+TG+ ++VL+VW N
Sbjct: 192 KRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHN 245
>At5g27000.1 68418.m03221 kinesin motor protein-related
non-consensus AT donor splice site at exon 12;
non-consensus AC acceptor splice site at exon 13
Length = 987
Score = 28.7 bits (61), Expect = 1.5
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 24 KRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQ 72
K RT+F+HH+ + +NQ ++LKQ T ++LQ+ +Q
Sbjct: 310 KFQRTNFEHHE----EQKILLNQQKHIQELKQTLYTTKAGMKLLQMKYQ 354
>At5g06710.1 68418.m00758 homeobox-leucine zipper protein 14 (HAT14)
/ HD-ZIP protein 14 contains similarity to homeodomain
leucine zipper protein
Length = 336
Score = 28.7 bits (61), Expect = 1.5
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 25 RMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAK 77
R + Q ++ F + + K LA++ L R ++VWFQN RA+
Sbjct: 189 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRAR 241
>At2g01500.1 68415.m00073 homeobox-leucine zipper transcription
factor family protein similar to wuschel protein
(GI:22087128) [Arabidopsis thaliana]
Length = 271
Score = 28.7 bits (61), Expect = 1.5
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 34 QLRTMKS-YFAINQNPDAKDLKQLAQKTGLSKRV----LQVWFQNARAKWRRNMMRQETN 88
Q+ T++ Y + + P + ++Q+A K R+ + WFQN +A+ R R+E
Sbjct: 68 QITTLEELYRSGTRTPTTEQIQQIASKLRKYGRIEGKNVFYWFQNHKARERLKRRRREGG 127
Query: 89 G-VNGHTSIVPGNGGTPSIVPTALILSEP 116
+ H + + G + T L S P
Sbjct: 128 AIIKPHKDVKDSSSGGHRVDQTKLCPSFP 156
>At1g75240.1 68414.m08741 zinc finger homeobox family protein /
ZF-HD homeobox family protein
Length = 309
Score = 28.7 bits (61), Expect = 1.5
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 24 KRMRTSFKHHQLRTMKSY-----FAINQNPDAKDLKQLAQKTGLSKRVLQVWFQN 73
KR RT F Q M + + +N+ D ++LK+ + G+ ++V +VW N
Sbjct: 241 KRFRTKFTTDQKERMMDFAEKLGWRMNKQ-DEEELKRFCGEIGVKRQVFKVWMHN 294
>At4g32980.1 68417.m04691 homeobox protein (ATH1) identical to
SWISS-PROT:P48731 homeobox protein ATH1. [Arabidopsis
thaliana]
Length = 473
Score = 27.9 bits (59), Expect = 2.6
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 47 NPDAKDLKQ--LAQKTGLSKRVLQVWFQNARAK-WRRNM--MRQETNGVNGHTSIVPGNG 101
+P KD ++ LA ++GL++ + WF NAR + W+ + M E N + S + NG
Sbjct: 397 HPYPKDSEKHLLAIRSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNKRKLNNSHIQPNG 456
Query: 102 GTPSIVPTALILSEPL 117
T +P ++++S+ +
Sbjct: 457 PTLR-MPKSVMMSQAM 471
>At1g62990.1 68414.m07113 homeodomain transcription factor (KNAT7)
contains Pfam profiles: PF03789 ELK domain, PF03790
KNOX1 domain, PF03791 KNOX2 domain; similar to homeobox
protein HD1 SP:P46606 from [Brassica napus]; identical
to cDNA homeodomain transcription factor KNAT7 (KNAT7)
GI:11878229
Length = 291
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 48 PDAKDLKQLAQKTGLSKRVLQVWFQNARAK-WRRN 81
P D +L ++TGL + + WF N R + W N
Sbjct: 244 PTEDDKAKLVEETGLQLKQINNWFINQRKRNWHNN 278
>At1g70510.1 68414.m08115 homeobox protein knotted-1 like 2 (KNAT2)
(K1) identical to homeobox protein knotted-1 like 2 (
KNAT2/ ATK1) SP: from [Arabidopsis thaliana]
Length = 310
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 48 PDAKDLKQLAQKTGLSKRVLQVWFQNARAK-WR 79
P D LA++TGL ++ + WF N R + W+
Sbjct: 258 PTEGDKISLAEETGLDQKQINNWFINQRKRHWK 290
>At4g35550.1 68417.m05052 homeobox-leucine zipper protein (HB-2) /
HD-ZIP protein HB2 homeodomain protein [Populus tremula
x Populus tremuloides] GI:3955021; contains Pfam
PF00046: Homeobox domain
Length = 268
Score = 26.6 bits (56), Expect = 5.9
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 51 KDL-KQLAQKTGLSKRVLQVWFQNARAKWRRNMMRQETNGVNGHTSIV 97
KD+ ++L+Q ++++ + WFQN RA+ +R ++G N S V
Sbjct: 127 KDITEELSQHGQIAEQNVYNWFQNRRARSKRKQHGGGSSGNNNGESEV 174
>At4g03250.1 68417.m00444 homeobox-leucine zipper family protein
similar to homeobox transcription factor Hox7
[Lycopersicon peruvianum] GI:19486; contains Pfam
PF00046: Homeobox domain
Length = 476
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/53 (20%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 38 MKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMMRQETNGV 90
+++++ ++ P + +LA++ GL+++ + WF + R K +R+ ++++ N +
Sbjct: 3 LENFYNEHKYPTEEMKGKLAEEVGLTEKQVSGWFCHRRLKDKRH-VKEDGNAI 54
>At5g46810.1 68418.m05767 expressed protein contains similarity to
carboxyl-terminal proteinase contains Pfam profile
PF03080: Arabidopsis proteins of unknown function
Length = 354
Score = 26.2 bits (55), Expect = 7.9
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 36 RTMKSYFAINQNPDAKDLKQLAQKTGLS---KRVLQVWFQNARAKWRRNMMRQETNGVNG 92
+ K++FAINQ+P +L K L + +L + + A + + ++G+
Sbjct: 212 QNFKAFFAINQDPKTNNLLLTVGKIYLGYWPEELLPFFTEGAESVIYGGLTNAPSDGIQP 271
Query: 93 HTSIVP--GNGGTP 104
+ P GNG P
Sbjct: 272 FNIVSPPMGNGNKP 285
>At4g08150.1 68417.m01346 homeobox protein knotted-1 like 1 (KNAT1)
identical to homeobox protein knotted-1 like 1 (KNAT1)
SP:P46639 from [Arabidopsis thaliana]
Length = 398
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 48 PDAKDLKQLAQKTGLSKRVLQVWFQNARAK-WR 79
P + LA+ TGL ++ + WF N R + W+
Sbjct: 329 PSESEKVALAESTGLDQKQINNWFINQRKRHWK 361
>At2g33690.1 68415.m04129 late embryogenesis abundant protein,
putative / LEA protein, putative similar to responsive
to water deficit, novel late embryogenesis abundant-like
protein PvLEA-18 (GI:2347086) [Phaseolus vulgaris]
Length = 71
Score = 26.2 bits (55), Expect = 7.9
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 84 RQETNGVNGHTSIVPGNGGTPSIVPT 109
++ G +GH + PG+GG + PT
Sbjct: 27 KKNAYGTSGHQDVKPGHGGGTTDAPT 52
>At2g14210.1 68415.m01583 MADS-box protein (ANR1) identical to ANR1,
MADS-box protein [Arabidopsis thaliana] GI:2959320
Length = 234
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 87 TNGVNGHTSIVPGNGGTPSIVPTALILSEPLQP 119
TN + G++S+ P + GT + P L L + LQP
Sbjct: 189 TNAIEGNSSVDPISNGTTTYAPPQLQLIQ-LQP 220
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.130 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,992,972
Number of Sequences: 28952
Number of extensions: 110807
Number of successful extensions: 347
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 279
Number of HSP's gapped (non-prelim): 82
length of query: 137
length of database: 12,070,560
effective HSP length: 74
effective length of query: 63
effective length of database: 9,928,112
effective search space: 625471056
effective search space used: 625471056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)
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